Wilkinson KA - Search Results

1

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.

Wilkinson KA, Merino EJ, Weeks KM. Wilkinson KA, et al. Nat Protoc. 2006;1(3):1610-6. doi: 10.1038/nprot.2006.249. Nat Protoc. 2006. PMID: 17406453

2

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM. Wilkinson KA, et al. RNA. 2009 Jul;15(7):1314-21. doi: 10.1261/rna.1536209. Epub 2009 May 20. RNA. 2009. PMID: 19458034 Free PMC article.

3

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.

Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC. Vasa SM, et al. Among authors: wilkinson ka. RNA. 2008 Oct;14(10):1979-90. doi: 10.1261/rna.1166808. Epub 2008 Sep 4. RNA. 2008. PMID: 18772246 Free PMC article.

4

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA.

Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM. Gherghe CM, et al. Among authors: wilkinson ka. J Am Chem Soc. 2008 Sep 17;130(37):12244-5. doi: 10.1021/ja804541s. Epub 2008 Aug 19. J Am Chem Soc. 2008. PMID: 18710236 Free PMC article.

5

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states.

Wilkinson KA, Gorelick RJ, Vasa SM, Guex N, Rein A, Mathews DH, Giddings MC, Weeks KM. Wilkinson KA, et al. PLoS Biol. 2008 Apr 29;6(4):e96. doi: 10.1371/journal.pbio.0060096. PLoS Biol. 2008. PMID: 18447581 Free PMC article.

6

Lack of secondary structure characterizes the 5' ends of mammalian mitochondrial mRNAs.

Jones CN, Wilkinson KA, Hung KT, Weeks KM, Spremulli LL. Jones CN, et al. Among authors: wilkinson ka. RNA. 2008 May;14(5):862-71. doi: 10.1261/rna.909208. Epub 2008 Mar 26. RNA. 2008. PMID: 18367717 Free PMC article.

7

Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry.

Wang B, Wilkinson KA, Weeks KM. Wang B, et al. Among authors: wilkinson ka. Biochemistry. 2008 Mar 18;47(11):3454-61. doi: 10.1021/bi702372x. Epub 2008 Feb 22. Biochemistry. 2008. PMID: 18290632

8

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).

Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM. Merino EJ, et al. Among authors: wilkinson ka. J Am Chem Soc. 2005 Mar 30;127(12):4223-31. doi: 10.1021/ja043822v. J Am Chem Soc. 2005. PMID: 15783204

9

RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts.

Wilkinson KA, Merino EJ, Weeks KM. Wilkinson KA, et al. J Am Chem Soc. 2005 Apr 6;127(13):4659-67. doi: 10.1021/ja0436749. J Am Chem Soc. 2005. PMID: 15796531

10

SUMOylation is required for glycine-induced increases in AMPA receptor surface expression (ChemLTP) in hippocampal neurons.

Jaafari N, Konopacki FA, Owen TF, Kantamneni S, Rubin P, Craig TJ, Wilkinson KA, Henley JM. Jaafari N, et al. Among authors: wilkinson ka. PLoS One. 2013;8(1):e52345. doi: 10.1371/journal.pone.0052345. Epub 2013 Jan 11. PLoS One. 2013. PMID: 23326329 Free PMC article.

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