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PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.
Gillespie JJ, Wattam AR, Cammer SA, Gabbard JL, Shukla MP, Dalay O, Driscoll T, Hix D, Mane SP, Mao C, Nordberg EK, Scott M, Schulman JR, Snyder EE, Sullivan DE, Wang C, Warren A, Williams KP, Xue T, Yoo HS, Zhang C, Zhang Y, Will R, Kenyon RW, Sobral BW. Gillespie JJ, et al. Among authors: williams kp. Infect Immun. 2011 Nov;79(11):4286-98. doi: 10.1128/IAI.00207-11. Epub 2011 Sep 6. Infect Immun. 2011. PMID: 21896772 Free PMC article. Review.
Loss of a universal tRNA feature.
Wang C, Sobral BW, Williams KP. Wang C, et al. Among authors: williams kp. J Bacteriol. 2007 Mar;189(5):1954-62. doi: 10.1128/JB.01203-06. Epub 2006 Dec 15. J Bacteriol. 2007. PMID: 17172343 Free PMC article.
A robust species tree for the alphaproteobacteria.
Williams KP, Sobral BW, Dickerman AW. Williams KP, et al. J Bacteriol. 2007 Jul;189(13):4578-86. doi: 10.1128/JB.00269-07. Epub 2007 May 4. J Bacteriol. 2007. PMID: 17483224 Free PMC article.
Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella.
Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ 3rd, Porcella SF, Samuel JE, Heinzen RA. Beare PA, et al. Among authors: williams kp. Infect Immun. 2009 Feb;77(2):642-56. doi: 10.1128/IAI.01141-08. Epub 2008 Dec 1. Infect Immun. 2009. PMID: 19047403 Free PMC article.
Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life.
Gillespie JJ, Williams K, Shukla M, Snyder EE, Nordberg EK, Ceraul SM, Dharmanolla C, Rainey D, Soneja J, Shallom JM, Vishnubhat ND, Wattam R, Purkayastha A, Czar M, Crasta O, Setubal JC, Azad AF, Sobral BS. Gillespie JJ, et al. PLoS One. 2008;3(4):e2018. doi: 10.1371/journal.pone.0002018. Epub 2008 Apr 16. PLoS One. 2008. PMID: 19194535 Free PMC article.
Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle.
Wattam AR, Williams KP, Snyder EE, Almeida NF Jr, Shukla M, Dickerman AW, Crasta OR, Kenyon R, Lu J, Shallom JM, Yoo H, Ficht TA, Tsolis RM, Munk C, Tapia R, Han CS, Detter JC, Bruce D, Brettin TS, Sobral BW, Boyle SM, Setubal JC. Wattam AR, et al. Among authors: williams kp. J Bacteriol. 2009 Jun;191(11):3569-79. doi: 10.1128/JB.01767-08. Epub 2009 Apr 3. J Bacteriol. 2009. PMID: 19346311 Free PMC article.
Variations on the tmRNA gene.
Mao C, Bhardwaj K, Sharkady SM, Fish RI, Driscoll T, Wower J, Zwieb C, Sobral BW, Williams KP. Mao C, et al. Among authors: williams kp. RNA Biol. 2009 Sep-Oct;6(4):355-61. doi: 10.4161/rna.6.4.9172. Epub 2009 Sep 4. RNA Biol. 2009. PMID: 19617710
Phylogenomics reveals a diverse Rickettsiales type IV secretion system.
Gillespie JJ, Brayton KA, Williams KP, Diaz MA, Brown WC, Azad AF, Sobral BW. Gillespie JJ, et al. Among authors: williams kp. Infect Immun. 2010 May;78(5):1809-23. doi: 10.1128/IAI.01384-09. Epub 2010 Feb 22. Infect Immun. 2010. PMID: 20176788 Free PMC article. Review.
Phylogeny of gammaproteobacteria.
Williams KP, Gillespie JJ, Sobral BW, Nordberg EK, Snyder EE, Shallom JM, Dickerman AW. Williams KP, et al. J Bacteriol. 2010 May;192(9):2305-14. doi: 10.1128/JB.01480-09. Epub 2010 Mar 5. J Bacteriol. 2010. PMID: 20207755 Free PMC article.
Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses.
Mane SP, Dominguez-Bello MG, Blaser MJ, Sobral BW, Hontecillas R, Skoneczka J, Mohapatra SK, Crasta OR, Evans C, Modise T, Shallom S, Shukla M, Varon C, Mégraud F, Maldonado-Contreras AL, Williams KP, Bassaganya-Riera J. Mane SP, et al. Among authors: williams kp. J Bacteriol. 2010 Jun;192(12):3078-92. doi: 10.1128/JB.00063-10. Epub 2010 Apr 16. J Bacteriol. 2010. PMID: 20400544 Free PMC article.
271 results