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9,367 results
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DBD--taxonomically broad transcription factor predictions: new content and functionality.
Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. Wilson D, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. doi: 10.1093/nar/gkm964. Epub 2007 Dec 11. Nucleic Acids Res. 2008. PMID: 18073188 Free PMC article.
Lineage-specific expansion of DNA-binding transcription factor families.
Charoensawan V, Wilson D, Teichmann SA. Charoensawan V, et al. Among authors: wilson d. Trends Genet. 2010 Sep;26(9):388-93. doi: 10.1016/j.tig.2010.06.004. Epub 2010 Jul 31. Trends Genet. 2010. PMID: 20675012 Free PMC article.
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.
Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J. Wilson D, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. doi: 10.1093/nar/gkn762. Epub 2008 Nov 26. Nucleic Acids Res. 2009. PMID: 19036790 Free PMC article.
Ensembl Genomes 2013: scaling up access to genome-wide data.
Kersey PJ, Allen JE, Christensen M, Davis P, Falin LJ, Grabmueller C, Hughes DS, Humphrey J, Kerhornou A, Khobova J, Langridge N, McDowall MD, Maheswari U, Maslen G, Nuhn M, Ong CK, Paulini M, Pedro H, Toneva I, Tuli MA, Walts B, Williams G, Wilson D, Youens-Clark K, Monaco MK, Stein J, Wei X, Ware D, Bolser DM, Howe KL, Kulesha E, Lawson D, Staines DM. Kersey PJ, et al. Among authors: wilson d. Nucleic Acids Res. 2014 Jan;42(Database issue):D546-52. doi: 10.1093/nar/gkt979. Epub 2013 Oct 25. Nucleic Acids Res. 2014. PMID: 24163254 Free PMC article.
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.
Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, Koscielny G, Louis C, Maccallum RM, Redmond SN, Sheehan A, Topalis P, Wilson D; VectorBase Consortium. Megy K, et al. Among authors: wilson d. Nucleic Acids Res. 2012 Jan;40(Database issue):D729-34. doi: 10.1093/nar/gkr1089. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135296 Free PMC article.
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.
Kersey PJ, Staines DM, Lawson D, Kulesha E, Derwent P, Humphrey JC, Hughes DS, Keenan S, Kerhornou A, Koscielny G, Langridge N, McDowall MD, Megy K, Maheswari U, Nuhn M, Paulini M, Pedro H, Toneva I, Wilson D, Yates A, Birney E. Kersey PJ, et al. Among authors: wilson d. Nucleic Acids Res. 2012 Jan;40(Database issue):D91-7. doi: 10.1093/nar/gkr895. Epub 2011 Nov 8. Nucleic Acids Res. 2012. PMID: 22067447 Free PMC article.
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
de Lima Morais DA, Fang H, Rackham OJ, Wilson D, Pethica R, Chothia C, Gough J. de Lima Morais DA, et al. Among authors: wilson d. Nucleic Acids Res. 2011 Jan;39(Database issue):D427-34. doi: 10.1093/nar/gkq1130. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062816 Free PMC article.
Genomic repertoires of DNA-binding transcription factors across the tree of life.
Charoensawan V, Wilson D, Teichmann SA. Charoensawan V, et al. Among authors: wilson d. Nucleic Acids Res. 2010 Nov;38(21):7364-77. doi: 10.1093/nar/gkq617. Epub 2010 Jul 30. Nucleic Acids Res. 2010. PMID: 20675356 Free PMC article. Review.
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database.
Pfreundt U, James DP, Tweedie S, Wilson D, Teichmann SA, Adryan B. Pfreundt U, et al. Among authors: wilson d. Nucleic Acids Res. 2010 Jan;38(Database issue):D443-7. doi: 10.1093/nar/gkp910. Epub 2009 Nov 1. Nucleic Acids Res. 2010. PMID: 19884132 Free PMC article.
InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Hunter S, et al. Among authors: wilson d. Nucleic Acids Res. 2009 Jan;37(Database issue):D211-5. doi: 10.1093/nar/gkn785. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940856 Free PMC article.
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