Wingender E - Search Results

1

Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems.

Fuchs M, Beißbarth T, Wingender E, Jung K. Fuchs M, et al. Among authors: wingender e. Comput Methods Programs Biomed. 2013 Sep;111(3):592-601. doi: 10.1016/j.cmpb.2013.05.013. Epub 2013 Jul 10. Comput Methods Programs Biomed. 2013. PMID: 23849930

2

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.

Kel A, Boyarskikh U, Stegmaier P, Leskov LS, Sokolov AV, Yevshin I, Mandrik N, Stelmashenko D, Koschmann J, Kel-Margoulis O, Krull M, Martínez-Cardús A, Moran S, Esteller M, Kolpakov F, Filipenko M, Wingender E. Kel A, et al. Among authors: wingender e. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):119. doi: 10.1186/s12859-019-2687-7. BMC Bioinformatics. 2019. PMID: 30999858 Free PMC article.

3

TFClass: a classification of human transcription factors and their rodent orthologs.

Wingender E, Schoeps T, Haubrock M, Dönitz J. Wingender E, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D97-102. doi: 10.1093/nar/gku1064. Epub 2014 Oct 31. Nucleic Acids Res. 2015. PMID: 25361979 Free PMC article.

4

Identifying cell-specific microRNA transcriptional start sites.

Hua X, Chen L, Wang J, Li J, Wingender E. Hua X, et al. Among authors: wingender e. Bioinformatics. 2016 Aug 15;32(16):2403-10. doi: 10.1093/bioinformatics/btw171. Epub 2016 Apr 19. Bioinformatics. 2016. PMID: 27153609

5

The architecture of the gene regulatory networks of different tissues.

Li J, Hua X, Haubrock M, Wang J, Wingender E. Li J, et al. Among authors: wingender e. Bioinformatics. 2012 Sep 15;28(18):i509-i514. doi: 10.1093/bioinformatics/bts387. Bioinformatics. 2012. PMID: 22962474 Free PMC article.

6

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

Hua X, Tang R, Xu X, Wang Z, Xu Q, Chen L, Wingender E, Li J, Zhang C, Wang J. Hua X, et al. Among authors: wingender e. Nucleic Acids Res. 2018 Jan 4;46(D1):D168-D174. doi: 10.1093/nar/gkx996. Nucleic Acids Res. 2018. PMID: 29077896 Free PMC article.

7

Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks.

Haubrock M, Li J, Wingender E. Haubrock M, et al. Among authors: wingender e. BMC Syst Biol. 2012;6 Suppl 2(Suppl 2):S15. doi: 10.1186/1752-0509-6-S2-S15. Epub 2012 Dec 12. BMC Syst Biol. 2012. PMID: 23282021 Free PMC article.

8

Criteria for an updated classification of human transcription factor DNA-binding domains.

Wingender E. Wingender E. J Bioinform Comput Biol. 2013 Feb;11(1):1340007. doi: 10.1142/S0219720013400076. Epub 2013 Jan 16. J Bioinform Comput Biol. 2013. PMID: 23427989

9

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information.

Meckbach C, Tacke R, Hua X, Waack S, Wingender E, Gültas M. Meckbach C, et al. Among authors: wingender e. BMC Bioinformatics. 2015 Dec 1;16:400. doi: 10.1186/s12859-015-0827-2. BMC Bioinformatics. 2015. PMID: 26627005 Free PMC article.

10

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes.

Bhar A, Haubrock M, Mukhopadhyay A, Wingender E. Bhar A, et al. Among authors: wingender e. BMC Bioinformatics. 2015 Jun 26;16:200. doi: 10.1186/s12859-015-0635-8. BMC Bioinformatics. 2015. PMID: 26108437 Free PMC article.

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