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83 results
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Bioinformatics for cancer immunotherapy target discovery.
Olsen LR, Campos B, Barnkob MS, Winther O, Brusic V, Andersen MH. Olsen LR, et al. Among authors: winther o. Cancer Immunol Immunother. 2014 Dec;63(12):1235-49. doi: 10.1007/s00262-014-1627-7. Epub 2014 Oct 26. Cancer Immunol Immunother. 2014. PMID: 25344903 Review.
DeepLoc: prediction of protein subcellular localization using deep learning.
Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O. Almagro Armenteros JJ, et al. Among authors: winther o. Bioinformatics. 2017 Nov 1;33(21):3387-3395. doi: 10.1093/bioinformatics/btx431. Bioinformatics. 2017. PMID: 29036616
Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma.
Rossing M, Borup R, Henao R, Winther O, Vikesaa J, Niazi O, Godballe C, Krogdahl A, Glud M, Hjort-Sørensen C, Kiss K, Bennedbæk FN, Nielsen FC. Rossing M, et al. Among authors: winther o. J Mol Endocrinol. 2012 Jan 25;48(1):11-23. doi: 10.1530/JME-11-0039. Print 2012 Feb. J Mol Endocrinol. 2012. PMID: 22049245
Discovery of regulatory elements is improved by a discriminatory approach.
Valen E, Sandelin A, Winther O, Krogh A. Valen E, et al. Among authors: winther o. PLoS Comput Biol. 2009 Nov;5(11):e1000562. doi: 10.1371/journal.pcbi.1000562. Epub 2009 Nov 13. PLoS Comput Biol. 2009. PMID: 19911049 Free PMC article.
BayesMD: flexible biological modeling for motif discovery.
Tang MH, Krogh A, Winther O. Tang MH, et al. Among authors: winther o. J Comput Biol. 2008 Dec;15(10):1347-63. doi: 10.1089/cmb.2007.0176. J Comput Biol. 2008. PMID: 19040368
Integrative analyses reveal novel strategies in HPV11,-16 and -45 early infection.
Kaczkowski B, Rossing M, Andersen DK, Dreher A, Morevati M, Visser MA, Winther O, Nielsen FC, Norrild B. Kaczkowski B, et al. Among authors: winther o. Sci Rep. 2012;2:515. doi: 10.1038/srep00515. Epub 2012 Jul 17. Sci Rep. 2012. PMID: 22808421 Free PMC article.
Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin.
Vikeså J, Møller AK, Kaczkowski B, Borup R, Winther O, Henao R, Krogh A, Perell K, Jensen F, Daugaard G, Nielsen FC. Vikeså J, et al. Among authors: winther o. BMC Cancer. 2015 Mar 19;15:151. doi: 10.1186/s12885-015-1128-x. BMC Cancer. 2015. PMID: 25885340 Free PMC article.
Angiotensinogen and HLA class II predict bevacizumab response in recurrent glioblastoma patients.
Urup T, Michaelsen SR, Olsen LR, Toft A, Christensen IJ, Grunnet K, Winther O, Broholm H, Kosteljanetz M, Issazadeh-Navikas S, Poulsen HS, Lassen U. Urup T, et al. Among authors: winther o. Mol Oncol. 2016 Oct;10(8):1160-8. doi: 10.1016/j.molonc.2016.05.005. Epub 2016 May 26. Mol Oncol. 2016. PMID: 27262894 Free PMC article.
An introduction to deep learning on biological sequence data: examples and solutions.
Jurtz VI, Johansen AR, Nielsen M, Almagro Armenteros JJ, Nielsen H, Sønderby CK, Winther O, Sønderby SK. Jurtz VI, et al. Among authors: winther o. Bioinformatics. 2017 Nov 15;33(22):3685-3690. doi: 10.1093/bioinformatics/btx531. Bioinformatics. 2017. PMID: 28961695 Free PMC article.
SignalP 5.0 improves signal peptide predictions using deep neural networks.
Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Among authors: winther o. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233
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