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Super-SILAC mix for quantitative proteomics of human tumor tissue.
Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M. Geiger T, et al. Nat Methods. 2010 May;7(5):383-5. doi: 10.1038/nmeth.1446. Epub 2010 Apr 4. Nat Methods. 2010. PMID: 20364148
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Zhang Y, Zhang Y, Adachi J, Olsen JV, Shi R, de Souza G, Pasini E, Foster LJ, Macek B, Zougman A, Kumar C, Wisniewski JR, Jun W, Mann M. Zhang Y, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D771-9. doi: 10.1093/nar/gkl784. Epub 2006 Nov 7. Nucleic Acids Res. 2007. PMID: 17090601 Free PMC article.
Analysis of the mouse liver proteome using advanced mass spectrometry.
Shi R, Kumar C, Zougman A, Zhang Y, Podtelejnikov A, Cox J, Wiśniewski JR, Mann M. Shi R, et al. J Proteome Res. 2007 Aug;6(8):2963-72. doi: 10.1021/pr0605668. Epub 2007 Jul 3. J Proteome Res. 2007. PMID: 17608399
Protocol to enrich and analyze plasma membrane proteins from frozen tissues.
Wiśniewski JR. Wiśniewski JR. Methods Mol Biol. 2008;432:175-83. doi: 10.1007/978-1-59745-028-7_12. Methods Mol Biol. 2008. PMID: 18370018
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.
Wiśniewski JR, Zougman A, Krüger S, Ziółkowski P, Pudełko M, Bebenek M, Mann M. Wiśniewski JR, et al. Proteins. 2008 Nov 15;73(3):710-8. doi: 10.1002/prot.22104. Proteins. 2008. PMID: 18491381
Mass spectrometry-based proteomics: principles, perspectives, and challenges.
Wiśniewski JR. Wiśniewski JR. Arch Pathol Lab Med. 2008 Oct;132(10):1566-9. doi: 10.1043/1543-2165(2008)132[1566:MSPPPA]2.0.CO;2. Arch Pathol Lab Med. 2008. PMID: 18834211
Evidence for insertional RNA editing in humans.
Zougman A, Ziółkowski P, Mann M, Wiśniewski JR. Zougman A, et al. Curr Biol. 2008 Nov 25;18(22):1760-5. doi: 10.1016/j.cub.2008.09.059. Epub 2008 Nov 6. Curr Biol. 2008. PMID: 18993075
Universal sample preparation method for proteome analysis.
Wiśniewski JR, Zougman A, Nagaraj N, Mann M. Wiśniewski JR, et al. Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19. Nat Methods. 2009. PMID: 19377485
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