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Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains.
Stabler RA, Gerding DN, Songer JG, Drudy D, Brazier JS, Trinh HT, Witney AA, Hinds J, Wren BW. Stabler RA, et al. J Bacteriol. 2006 Oct;188(20):7297-305. doi: 10.1128/JB.00664-06. J Bacteriol. 2006. PMID: 17015669 Free PMC article.
Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa.
Witney AA, Gould KA, Pope CF, Bolt F, Stoker NG, Cubbon MD, Bradley CR, Fraise A, Breathnach AS, Butcher PD, Planche TD, Hinds J. Witney AA, et al. Clin Microbiol Infect. 2014 Oct;20(10):O609-18. doi: 10.1111/1469-0691.12528. Epub 2014 Feb 8. Clin Microbiol Infect. 2014. PMID: 24422878
A two-component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniae.
McCluskey J, Hinds J, Husain S, Witney A, Mitchell TJ. McCluskey J, et al. Mol Microbiol. 2004 Mar;51(6):1661-75. doi: 10.1111/j.1365-2958.2003.03917.x. Mol Microbiol. 2004. PMID: 15009893
Within-host diversity of MRSA antimicrobial resistances.
Stanczak-Mrozek KI, Manne A, Knight GM, Gould K, Witney AA, Lindsay JA. Stanczak-Mrozek KI, et al. J Antimicrob Chemother. 2015 Aug;70(8):2191-8. doi: 10.1093/jac/dkv119. Epub 2015 May 8. J Antimicrob Chemother. 2015. PMID: 25957384 Free PMC article.
Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes.
Hepworth PJ, Ashelford KE, Hinds J, Gould KA, Witney AA, Williams NJ, Leatherbarrow H, French NP, Birtles RJ, Mendonca C, Dorrell N, Wren BW, Wigley P, Hall N, Winstanley C. Hepworth PJ, et al. Environ Microbiol. 2011 Jun;13(6):1549-60. doi: 10.1111/j.1462-2920.2011.02461.x. Epub 2011 Mar 21. Environ Microbiol. 2011. PMID: 21418497 Free PMC article.
The distribution of mobile genetic elements (MGEs) in MRSA CC398 is associated with both host and country.
McCarthy AJ, Witney AA, Gould KA, Moodley A, Guardabassi L, Voss A, Denis O, Broens EM, Hinds J, Lindsay JA. McCarthy AJ, et al. Genome Biol Evol. 2011;3:1164-74. doi: 10.1093/gbe/evr092. Epub 2011 Sep 13. Genome Biol Evol. 2011. PMID: 21920902 Free PMC article.
Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases.
Witney AA, Gould KA, Arnold A, Coleman D, Delgado R, Dhillon J, Pond MJ, Pope CF, Planche TD, Stoker NG, Cosgrove CA, Butcher PD, Harrison TS, Hinds J. Witney AA, et al. J Clin Microbiol. 2015 May;53(5):1473-83. doi: 10.1128/JCM.02993-14. Epub 2015 Feb 11. J Clin Microbiol. 2015. PMID: 25673793 Free PMC article.
Extensive horizontal gene transfer during Staphylococcus aureus co-colonization in vivo.
McCarthy AJ, Loeffler A, Witney AA, Gould KA, Lloyd DH, Lindsay JA. McCarthy AJ, et al. Genome Biol Evol. 2014 Sep 25;6(10):2697-708. doi: 10.1093/gbe/evu214. Genome Biol Evol. 2014. PMID: 25260585 Free PMC article.
High-Resolution Analysis by Whole-Genome Sequencing of an International Lineage (Sequence Type 111) of Pseudomonas aeruginosa Associated with Metallo-Carbapenemases in the United Kingdom.
Turton JF, Wright L, Underwood A, Witney AA, Chan YT, Al-Shahib A, Arnold C, Doumith M, Patel B, Planche TD, Green J, Holliman R, Woodford N. Turton JF, et al. J Clin Microbiol. 2015 Aug;53(8):2622-31. doi: 10.1128/JCM.00505-15. Epub 2015 Jun 3. J Clin Microbiol. 2015. PMID: 26041902 Free PMC article.
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