Wodak SJ - Search Results

1

Computational protein design is a challenge for implicit solvation models.

Jaramillo A, Wodak SJ. Jaramillo A, et al. Among authors: wodak sj. Biophys J. 2005 Jan;88(1):156-71. doi: 10.1529/biophysj.104.042044. Epub 2004 Sep 17. Biophys J. 2005. PMID: 15377512 Free PMC article.

2

Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase.

Prevost M, Wodak SJ, Tidor B, Karplus M. Prevost M, et al. Among authors: wodak sj. Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10880-4. doi: 10.1073/pnas.88.23.10880. Proc Natl Acad Sci U S A. 1991. PMID: 1961758 Free PMC article.

3

Structural principles of parallel beta-barrels in proteins.

Lasters I, Wodak SJ, Alard P, van Cutsem E. Lasters I, et al. Among authors: wodak sj. Proc Natl Acad Sci U S A. 1988 May;85(10):3338-42. doi: 10.1073/pnas.85.10.3338. Proc Natl Acad Sci U S A. 1988. PMID: 3368445 Free PMC article.

4

Automatic procedures for protein design.

Jaramillo A, Wernisch L, Hery S, Wodak SJ. Jaramillo A, et al. Among authors: wodak sj. Comb Chem High Throughput Screen. 2001 Dec;4(8):643-59. doi: 10.2174/1386207013330724. Comb Chem High Throughput Screen. 2001. PMID: 11812260 Review.

5

Are database-derived potentials valid for scoring both forward and inverted protein folding?

Rooman MJ, Wodak SJ. Rooman MJ, et al. Among authors: wodak sj. Protein Eng. 1995 Sep;8(9):849-58. doi: 10.1093/protein/8.9.849. Protein Eng. 1995. PMID: 8746722 Review.

6

Graph-based analysis of metabolic networks.

van Helden J, Wernisch L, Gilbert D, Wodak SJ. van Helden J, et al. Among authors: wodak sj. Ernst Schering Res Found Workshop. 2002;(38):245-74. doi: 10.1007/978-3-662-04747-7_12. Ernst Schering Res Found Workshop. 2002. PMID: 12061005 Review. No abstract available.

7

Pathways of ligand clearance in acetylcholinesterase by multiple copy sampling.

Van Belle D, De Maria L, Iurcu G, Wodak SJ. Van Belle D, et al. Among authors: wodak sj. J Mol Biol. 2000 May 12;298(4):705-26. doi: 10.1006/jmbi.2000.3698. J Mol Biol. 2000. PMID: 10788331

8

Properties of the protein matrix revealed by the free energy of cavity formation.

Kocher JP, Prévost M, Wodak SJ, Lee B. Kocher JP, et al. Among authors: wodak sj. Structure. 1996 Dec 15;4(12):1517-29. doi: 10.1016/s0969-2126(96)00157-8. Structure. 1996. PMID: 8994976

9

Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins.

Rooman MJ, Wodak SJ. Rooman MJ, et al. Among authors: wodak sj. Biochemistry. 1992 Oct 27;31(42):10239-49. doi: 10.1021/bi00157a010. Biochemistry. 1992. PMID: 1329944

10

Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions.

Rooman MJ, Kocher JP, Wodak SJ. Rooman MJ, et al. Among authors: wodak sj. Biochemistry. 1992 Oct 27;31(42):10226-38. doi: 10.1021/bi00157a009. Biochemistry. 1992. PMID: 1420144

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