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Genome trees and the tree of life.
Wolf YI, Rogozin IB, Grishin NV, Koonin EV. Wolf YI, et al. Trends Genet. 2002 Sep;18(9):472-9. doi: 10.1016/s0168-9525(02)02744-0. Trends Genet. 2002. PMID: 12175808 Review.
Distribution of protein folds in the three superkingdoms of life.
Wolf YI, Brenner SE, Bash PA, Koonin EV. Wolf YI, et al. Genome Res. 1999 Jan;9(1):17-26. Genome Res. 1999. PMID: 9927481
Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange.
Wolf YI, Aravind L, Koonin EV. Wolf YI, et al. Trends Genet. 1999 May;15(5):173-5. doi: 10.1016/s0168-9525(99)01704-7. Trends Genet. 1999. PMID: 10322483 Review. No abstract available.
Reply.
Aravind L, Tatusov RL, Wolf YI, Walker DR, Koonin EV. Aravind L, et al. Among authors: wolf yi. Trends Genet. 1999 Aug;15(8):299-300. doi: 10.1016/s0168-9525(99)01786-2. Trends Genet. 1999. PMID: 10431190 No abstract available.
Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species.
Makarova KS, Wolf YI, White O, Minton K, Daly MJ. Makarova KS, et al. Among authors: wolf yi. Res Microbiol. 1999 Nov-Dec;150(9-10):711-24. doi: 10.1016/s0923-2508(99)00121-7. Res Microbiol. 1999. PMID: 10673009
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
Schäffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF. Schäffer AA, et al. Among authors: wolf yi. Bioinformatics. 1999 Dec;15(12):1000-11. doi: 10.1093/bioinformatics/15.12.1000. Bioinformatics. 1999. PMID: 10745990
Protein fold recognition using sequence profiles and its application in structural genomics.
Koonin EV, Wolf YI, Aravind L. Koonin EV, et al. Among authors: wolf yi. Adv Protein Chem. 2000;54:245-75. doi: 10.1016/s0065-3233(00)54008-x. Adv Protein Chem. 2000. PMID: 10829230 Review. No abstract available.
Estimating the number of protein folds and families from complete genome data.
Wolf YI, Grishin NV, Koonin EV. Wolf YI, et al. J Mol Biol. 2000 Jun 16;299(4):897-905. doi: 10.1006/jmbi.2000.3786. J Mol Biol. 2000. PMID: 10843846
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