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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. Makarova KS, et al. Biol Direct. 2006 Mar 16;1:7. doi: 10.1186/1745-6150-1-7. Biol Direct. 2006. PMID: 16545108 Free PMC article.
Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species.
Makarova KS, Wolf YI, White O, Minton K, Daly MJ. Makarova KS, et al. Res Microbiol. 1999 Nov-Dec;150(9-10):711-24. doi: 10.1016/s0923-2508(99)00121-7. Res Microbiol. 1999. PMID: 10673009
Estimating the number of protein folds and families from complete genome data.
Wolf YI, Grishin NV, Koonin EV. Wolf YI, et al. J Mol Biol. 2000 Jun 16;299(4):897-905. doi: 10.1006/jmbi.2000.3786. J Mol Biol. 2000. PMID: 10843846
No footprints of primordial introns in a eukaryotic genome.
Wolf YI, Kondrashov FA, Koonin EV. Wolf YI, et al. Trends Genet. 2000 Aug;16(8):333-4. doi: 10.1016/s0168-9525(00)02059-x. Trends Genet. 2000. PMID: 10904260 Review. No abstract available.
Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).
Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV. Natale DA, et al. Genome Biol. 2000;1(5):RESEARCH0009. doi: 10.1186/gb-2000-1-5-research0009. Epub 2000 Nov 6. Genome Biol. 2000. PMID: 11178258 Free PMC article.
Interkingdom gene fusions.
Wolf YI, Kondrashov AS, Koonin EV. Wolf YI, et al. Genome Biol. 2000;1(6):RESEARCH0013. doi: 10.1186/gb-2000-1-6-research0013. Epub 2000 Dec 4. Genome Biol. 2000. PMID: 11178267 Free PMC article.
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