Wong WC - Search Results

1

More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology.

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. PLoS Comput Biol. 2010 Jul 29;6(7):e1000867. doi: 10.1371/journal.pcbi.1000867. PLoS Comput Biol. 2010. PMID: 20686689 Free PMC article.

2

ANNIE: integrated de novo protein sequence annotation.

Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. Ooi HS, et al. Among authors: wong wc. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W435-40. doi: 10.1093/nar/gkp254. Epub 2009 Apr 23. Nucleic Acids Res. 2009. PMID: 19389726 Free PMC article.

3

R-POPTVR: a novel reinforcement-based POPTVR fuzzy neural network for pattern classification.

Wong WC, Cho SY, Quek C. Wong WC, et al. IEEE Trans Neural Netw. 2009 Nov;20(11):1740-55. doi: 10.1109/TNN.2009.2029857. Epub 2009 Sep 18. IEEE Trans Neural Netw. 2009. PMID: 19770091

4

The Janus-faced E-values of HMMER2: extreme value distribution or logistic function?

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. J Bioinform Comput Biol. 2011 Feb;9(1):179-206. J Bioinform Comput Biol. 2011. PMID: 21328712

5

Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins.

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. Biol Direct. 2011 Oct 25;6:57. doi: 10.1186/1745-6150-6-57. Biol Direct. 2011. PMID: 22024092 Free PMC article.

6

Transmembrane helix: simple or complex.

Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F. Wong WC, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W370-5. doi: 10.1093/nar/gks379. Epub 2012 May 7. Nucleic Acids Res. 2012. PMID: 22564899 Free PMC article.

7

A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads.

Maurer-Stroh S, Gunalan V, Wong WC, Eisenhaber F. Maurer-Stroh S, et al. Among authors: wong wc. J Bioinform Comput Biol. 2013 Dec;11(6):1343005. doi: 10.1142/S0219720013430051. Epub 2013 Dec 2. J Bioinform Comput Biol. 2013. PMID: 24372034

8

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.

Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Wong WC, et al. BMC Bioinformatics. 2014 Jun 2;15:166. doi: 10.1186/1471-2105-15-166. BMC Bioinformatics. 2014. PMID: 24890864 Free PMC article.

9

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.

Wong WC, Yap CK, Eisenhaber B, Eisenhaber F. Wong WC, et al. Biol Direct. 2015 Aug 1;10:39. doi: 10.1186/s13062-015-0068-3. Biol Direct. 2015. PMID: 26228544 Free PMC article.

10

The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.

Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F. Eisenhaber B, et al. Among authors: wong wc. Methods Mol Biol. 2016;1415:477-506. doi: 10.1007/978-1-4939-3572-7_25. Methods Mol Biol. 2016. PMID: 27115649

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