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Analysis of compositionally biased regions in sequence databases.
Wootton JC, Federhen S. Wootton JC, et al. Methods Enzymol. 1996;266:554-71. doi: 10.1016/s0076-6879(96)66035-2. Methods Enzymol. 1996. PMID: 8743706 No abstract available.
The compositional adjustment of amino acid substitution matrices.
Yu YK, Wootton JC, Altschul SF. Yu YK, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15688-93. doi: 10.1073/pnas.2533904100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663142 Free PMC article.
Protein database searches using compositionally adjusted substitution matrices.
Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK. Altschul SF, et al. Among authors: wootton jc. FEBS J. 2005 Oct;272(20):5101-9. doi: 10.1111/j.1742-4658.2005.04945.x. FEBS J. 2005. PMID: 16218944 Free PMC article. Review.
The construction and use of log-odds substitution scores for multiple sequence alignment.
Altschul SF, Wootton JC, Zaslavsky E, Yu YK. Altschul SF, et al. Among authors: wootton jc. PLoS Comput Biol. 2010 Jul 15;6(7):e1000852. doi: 10.1371/journal.pcbi.1000852. PLoS Comput Biol. 2010. PMID: 20657661 Free PMC article.
Molecular cloning of Drosophila TFIID subunits.
Kokubo T, Gong DW, Wootton JC, Horikoshi M, Roeder RG, Nakatani Y. Kokubo T, et al. Nature. 1994 Feb 3;367(6462):484-7. doi: 10.1038/367484a0. Nature. 1994. PMID: 7545910
Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment.
Lawrence CE, Altschul SF, Boguski MS, Liu JS, Neuwald AF, Wootton JC. Lawrence CE, et al. Science. 1993 Oct 8;262(5131):208-14. doi: 10.1126/science.8211139. Science. 1993. PMID: 8211139
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