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1,052 results
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Predicting nucleosome positioning using a duration Hidden Markov Model.
Xi L, Fondufe-Mittendorf Y, Xia L, Flatow J, Widom J, Wang JP. Xi L, et al. BMC Bioinformatics. 2010 Jun 24;11:346. doi: 10.1186/1471-2105-11-346. BMC Bioinformatics. 2010. PMID: 20576140 Free PMC article.
A locally convoluted cluster model for nucleosome positioning signals in chemical map.
Xi L, Brogaard K, Zhang Q, Lindsay B, Widom J, Wang JP. Xi L, et al. J Am Stat Assoc. 2014 Jan 1;109(505):48-62. doi: 10.1080/01621459.2013.862169. J Am Stat Assoc. 2014. PMID: 24678133 Free PMC article.
Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs.
Nalabothula N, Xi L, Bhattacharyya S, Widom J, Wang JP, Reeve JN, Santangelo TJ, Fondufe-Mittendorf YN. Nalabothula N, et al. Among authors: xi l. BMC Genomics. 2013 Jun 10;14:391. doi: 10.1186/1471-2164-14-391. BMC Genomics. 2013. PMID: 23758892 Free PMC article.
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning.
Moyle-Heyrman G, Zaichuk T, Xi L, Zhang Q, Uhlenbeck OC, Holmgren R, Widom J, Wang JP. Moyle-Heyrman G, et al. Among authors: xi l. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63. doi: 10.1073/pnas.1315809110. Epub 2013 Nov 25. Proc Natl Acad Sci U S A. 2013. PMID: 24277842 Free PMC article.
Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping.
Voong LN, Xi L, Wang JP, Wang X. Voong LN, et al. Among authors: xi l. Trends Genet. 2017 Aug;33(8):495-507. doi: 10.1016/j.tig.2017.05.007. Epub 2017 Jul 7. Trends Genet. 2017. PMID: 28693826 Free PMC article. Review.
Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping.
Voong LN, Xi L, Sebeson AC, Xiong B, Wang JP, Wang X. Voong LN, et al. Among authors: xi l. Cell. 2016 Dec 1;167(6):1555-1570.e15. doi: 10.1016/j.cell.2016.10.049. Epub 2016 Nov 23. Cell. 2016. PMID: 27889238 Free PMC article.
Differential Nucleosome Occupancies across Oct4-Sox2 Binding Sites in Murine Embryonic Stem Cells.
Sebeson A, Xi L, Zhang Q, Sigmund A, Wang JP, Widom J, Wang X. Sebeson A, et al. Among authors: xi l. PLoS One. 2015 May 18;10(5):e0127214. doi: 10.1371/journal.pone.0127214. eCollection 2015. PLoS One. 2015. PMID: 25992972 Free PMC article.
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