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HMDB: a knowledgebase for the human metabolome.
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B, Hau DD, Psychogios N, Dong E, Bouatra S, Mandal R, Sinelnikov I, Xia J, Jia L, Cruz JA, Lim E, Sobsey CA, Shrivastava S, Huang P, Liu P, Fang L, Peng J, Fradette R, Cheng D, Tzur D, Clements M, Lewis A, De Souza A, Zuniga A, Dawe M, Xiong Y, Clive D, Greiner R, Nazyrova A, Shaykhutdinov R, Li L, Vogel HJ, Forsythe I. Wishart DS, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D603-10. doi: 10.1093/nar/gkn810. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953024 Free PMC article.
MetaboAnalyst: a web server for metabolomic data analysis and interpretation.
Xia J, Psychogios N, Young N, Wishart DS. Xia J, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W652-60. doi: 10.1093/nar/gkp356. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429898 Free PMC article.
SMPDB: The Small Molecule Pathway Database.
Frolkis A, Knox C, Lim E, Jewison T, Law V, Hau DD, Liu P, Gautam B, Ly S, Guo AC, Xia J, Liang Y, Shrivastava S, Wishart DS. Frolkis A, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D480-7. doi: 10.1093/nar/gkp1002. Epub 2009 Nov 30. Nucleic Acids Res. 2010. PMID: 19948758 Free PMC article.
MetPA: a web-based metabolomics tool for pathway analysis and visualization.
Xia J, Wishart DS. Xia J, et al. Bioinformatics. 2010 Sep 15;26(18):2342-4. doi: 10.1093/bioinformatics/btq418. Epub 2010 Jul 13. Bioinformatics. 2010. PMID: 20628077
The human serum metabolome.
Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, Sinelnikov I, Krishnamurthy R, Eisner R, Gautam B, Young N, Xia J, Knox C, Dong E, Huang P, Hollander Z, Pedersen TL, Smith SR, Bamforth F, Greiner R, McManus B, Newman JW, Goodfriend T, Wishart DS. Psychogios N, et al. PLoS One. 2011 Feb 16;6(2):e16957. doi: 10.1371/journal.pone.0016957. PLoS One. 2011. PMID: 21359215 Free PMC article.
Metabolomic data processing, analysis, and interpretation using MetaboAnalyst.
Xia J, Wishart DS. Xia J, et al. Curr Protoc Bioinformatics. 2011 Jun;Chapter 14:Unit 14.10. doi: 10.1002/0471250953.bi1410s34. Curr Protoc Bioinformatics. 2011. PMID: 21633943
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