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4,567 results
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CNV-seq, a new method to detect copy number variation using high-throughput sequencing.
Xie C, Tammi MT. Xie C, et al. BMC Bioinformatics. 2009 Mar 6;10:80. doi: 10.1186/1471-2105-10-80. BMC Bioinformatics. 2009. PMID: 19267900 Free PMC article.
A poor man's BLASTX--high-throughput metagenomic protein database search using PAUDA.
Huson DH, Xie C. Huson DH, et al. Among authors: xie c. Bioinformatics. 2014 Jan 1;30(1):38-9. doi: 10.1093/bioinformatics/btt254. Epub 2013 May 7. Bioinformatics. 2014. PMID: 23658416 Free PMC article.
Fast and sensitive protein alignment using DIAMOND.
Buchfink B, Xie C, Huson DH. Buchfink B, et al. Among authors: xie c. Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17. Nat Methods. 2015. PMID: 25402007
Deep sequencing of 10,000 human genomes.
Telenti A, Pierce LC, Biggs WH, di Iulio J, Wong EH, Fabani MM, Kirkness EF, Moustafa A, Shah N, Xie C, Brewerton SC, Bulsara N, Garner C, Metzker G, Sandoval E, Perkins BA, Och FJ, Turpaz Y, Venter JC. Telenti A, et al. Among authors: xie c. Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11901-11906. doi: 10.1073/pnas.1613365113. Epub 2016 Oct 4. Proc Natl Acad Sci U S A. 2016. PMID: 27702888 Free PMC article.
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.
Xie C, Goi CL, Huson DH, Little PF, Williams RB. Xie C, et al. BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):508. doi: 10.1186/s12859-016-1378-x. BMC Bioinformatics. 2016. PMID: 28155666 Free PMC article.
Identification of individuals by trait prediction using whole-genome sequencing data.
Lippert C, Sabatini R, Maher MC, Kang EY, Lee S, Arikan O, Harley A, Bernal A, Garst P, Lavrenko V, Yocum K, Wong T, Zhu M, Yang WY, Chang C, Lu T, Lee CWH, Hicks B, Ramakrishnan S, Tang H, Xie C, Piper J, Brewerton S, Turpaz Y, Telenti A, Roby RK, Och FJ, Venter JC. Lippert C, et al. Among authors: xie c. Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10166-10171. doi: 10.1073/pnas.1711125114. Epub 2017 Sep 5. Proc Natl Acad Sci U S A. 2017. PMID: 28874526 Free PMC article.
Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R. Huson DH, et al. Among authors: xie c. Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2. Microbiome. 2017. PMID: 28122610 Free PMC article.
Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities.
Tan SM, Yung PYM, Hutchinson PE, Xie C, Teo GH, Ismail MH, Drautz-Moses DI, Little PFR, Williams RBH, Cohen Y. Tan SM, et al. Among authors: xie c. NPJ Biofilms Microbiomes. 2019 Jun 25;5:17. doi: 10.1038/s41522-019-0090-9. eCollection 2019. NPJ Biofilms Microbiomes. 2019. PMID: 31263569 Free PMC article.
[No authors listed] [No authors listed] PMID: 32576834
The BpsIR quorum-sensing system of Burkholderia pseudomallei.
Song Y, Xie C, Ong YM, Gan YH, Chua KL. Song Y, et al. Among authors: xie c. J Bacteriol. 2005 Jan;187(2):785-90. doi: 10.1128/JB.187.2.785-790.2005. J Bacteriol. 2005. PMID: 15629951 Free PMC article.
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