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EXCAVATOR: a computer program for efficiently mining gene expression data.
Xu D, Olman V, Wang L, Xu Y. Xu D, et al. Nucleic Acids Res. 2003 Oct 1;31(19):5582-9. doi: 10.1093/nar/gkg783. Nucleic Acids Res. 2003. PMID: 14500821 Free PMC article.
A computational pipeline for protein structure prediction and analysis at genome scale.
Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y. Shah M, et al. Bioinformatics. 2003 Oct 12;19(15):1985-96. doi: 10.1093/bioinformatics/btg262. Bioinformatics. 2003. PMID: 14555633
CUBIC: identification of regulatory binding sites through data clustering.
Olman V, Xu D, Xu Y. Olman V, et al. J Bioinform Comput Biol. 2003 Apr;1(1):21-40. doi: 10.1142/s0219720003000162. J Bioinform Comput Biol. 2003. PMID: 15290780
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