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39,886 results
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Nezha, a novel active miniature inverted-repeat transposable element in cyanobacteria.
Zhou F, Tran T, Xu Y. Zhou F, et al. Among authors: xu y. Biochem Biophys Res Commun. 2008 Jan 25;365(4):790-4. doi: 10.1016/j.bbrc.2007.11.038. Epub 2007 Nov 21. Biochem Biophys Res Commun. 2008. PMID: 18035045
Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.
Liu Z, Mao F, Guo JT, Yan B, Wang P, Qu Y, Xu Y. Liu Z, et al. Among authors: xu y. Nucleic Acids Res. 2005 Jan 26;33(2):546-58. doi: 10.1093/nar/gki204. Print 2005. Nucleic Acids Res. 2005. PMID: 15673715 Free PMC article.
Prediction of functional modules based on comparative genome analysis and Gene Ontology application.
Wu H, Su Z, Mao F, Olman V, Xu Y. Wu H, et al. Among authors: xu y. Nucleic Acids Res. 2005 May 18;33(9):2822-37. doi: 10.1093/nar/gki573. Print 2005. Nucleic Acids Res. 2005. PMID: 15901854 Free PMC article.
Comparative genomics analysis of NtcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis.
Su Z, Olman V, Mao F, Xu Y. Su Z, et al. Among authors: xu y. Nucleic Acids Res. 2005 Sep 12;33(16):5156-71. doi: 10.1093/nar/gki817. Print 2005. Nucleic Acids Res. 2005. PMID: 16157864 Free PMC article.
Mapping of orthologous genes in the context of biological pathways: An application of integer programming.
Mao F, Su Z, Olman V, Dam P, Liu Z, Xu Y. Mao F, et al. Among authors: xu y. Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):129-34. doi: 10.1073/pnas.0509737102. Epub 2005 Dec 22. Proc Natl Acad Sci U S A. 2006. PMID: 16373500 Free PMC article.
Accurate prediction of orthologous gene groups in microbes.
Wu H, Mao F, Olman V, Xu Y. Wu H, et al. Among authors: xu y. Proc IEEE Comput Syst Bioinform Conf. 2005:73-9. doi: 10.1109/csb.2005.10. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447964
Mapping of microbial pathways through constrained mapping of orthologous genes.
Olman V, Peng H, Su Z, Xu Y. Olman V, et al. Among authors: xu y. Proc IEEE Comput Syst Bioinform Conf. 2004:363-70. doi: 10.1109/csb.2004.1332449. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16448029
Detecting uber-operons in prokaryotic genomes.
Che D, Li G, Mao F, Wu H, Xu Y. Che D, et al. Among authors: xu y. Nucleic Acids Res. 2006 May 8;34(8):2418-27. doi: 10.1093/nar/gkl294. Print 2006. Nucleic Acids Res. 2006. PMID: 16682449 Free PMC article.
Operon prediction using both genome-specific and general genomic information.
Dam P, Olman V, Harris K, Su Z, Xu Y. Dam P, et al. Among authors: xu y. Nucleic Acids Res. 2007;35(1):288-98. doi: 10.1093/nar/gkl1018. Epub 2006 Dec 14. Nucleic Acids Res. 2007. PMID: 17170009 Free PMC article.
Hierarchical classification of functionally equivalent genes in prokaryotes.
Wu H, Mao F, Olman V, Xu Y. Wu H, et al. Among authors: xu y. Nucleic Acids Res. 2007;35(7):2125-40. doi: 10.1093/nar/gkl1114. Epub 2007 Mar 11. Nucleic Acids Res. 2007. PMID: 17353185 Free PMC article.
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