Xu Y - Search Results

1

SMILE: mutual information learning for integration of single-cell omics data.

Xu Y, Das P, McCord RP. Xu Y, et al. Bioinformatics. 2022 Jan 3;38(2):476-486. doi: 10.1093/bioinformatics/btab706. Bioinformatics. 2022. PMID: 34623402 Free PMC article.

2

CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis.

Xu Y, McCord RP. Xu Y, et al. BMC Bioinformatics. 2021 Aug 9;22(1):397. doi: 10.1186/s12859-021-04314-1. BMC Bioinformatics. 2021. PMID: 34372758 Free PMC article.

3

sciCAN: single-cell chromatin accessibility and gene expression data integration via cycle-consistent adversarial network.

Xu Y, Begoli E, McCord RP. Xu Y, et al. NPJ Syst Biol Appl. 2022 Sep 12;8(1):33. doi: 10.1038/s41540-022-00245-6. NPJ Syst Biol Appl. 2022. PMID: 36089620 Free PMC article.

4

Radiation-induced DNA damage and repair effects on 3D genome organization.

Sanders JT, Freeman TF, Xu Y, Golloshi R, Stallard MA, Hill AM, San Martin R, Balajee AS, McCord RP. Sanders JT, et al. Among authors: xu y. Nat Commun. 2020 Dec 2;11(1):6178. doi: 10.1038/s41467-020-20047-w. Nat Commun. 2020. PMID: 33268790 Free PMC article.

5

Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression.

San Martin R, Das P, Dos Reis Marques R, Xu Y, Roberts JM, Sanders JT, Golloshi R, McCord RP. San Martin R, et al. Among authors: xu y. J Cell Biol. 2022 Feb 7;221(2):e202104108. doi: 10.1083/jcb.202104108. Epub 2021 Dec 10. J Cell Biol. 2022. PMID: 34889941 Free PMC article.

6

Diagonal integration of multimodal single-cell data: potential pitfalls and paths forward.

Xu Y, McCord RP. Xu Y, et al. Nat Commun. 2022 Jun 18;13(1):3505. doi: 10.1038/s41467-022-31104-x. Nat Commun. 2022. PMID: 35717437 Free PMC article.

7

Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.

Sanders JT, Golloshi R, Das P, Xu Y, Terry PH, Nash DG, Dekker J, McCord RP. Sanders JT, et al. Among authors: xu y. Sci Rep. 2022 Mar 18;12(1):4721. doi: 10.1038/s41598-022-08602-5. Sci Rep. 2022. PMID: 35304523 Free PMC article.

8

SnapShot: Chromosome organization.

McCord RP, Xu Y, Li H, Das P, San Martin R. McCord RP, et al. Among authors: xu y. Mol Cell. 2022 Jun 16;82(12):2350-2350.e1. doi: 10.1016/j.molcel.2022.05.020. Mol Cell. 2022. PMID: 35714589 Free article.

9

In-hospital mortality and length of hospital stay in infants requiring tracheostomy with bronchopulmonary dysplasia.

Zhu R, Xu Y, Qin Y, Xu J, Wang R, Wu S, Cheng Y, Luo X, Tai Y, Chen C, He J, Wang S, Wu C. Zhu R, et al. Among authors: xu y. J Perinatol. 2023 Dec 8. doi: 10.1038/s41372-023-01840-z. Online ahead of print. J Perinatol. 2023. PMID: 38066226

10

Potential drug targets for myocardial infarction identified through Mendelian randomization analysis and Genetic colocalization.

Wu J, Fan Q, He Q, Zhong Q, Zhu X, Cai H, He X, Xu Y, Huang Y, Di X. Wu J, et al. Among authors: xu y. Medicine (Baltimore). 2023 Dec 8;102(49):e36284. doi: 10.1097/MD.0000000000036284. Medicine (Baltimore). 2023. PMID: 38065874

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