Xuan Y - Search Results

1

Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility of Results.

Bruderer R, Bernhardt OM, Gandhi T, Xuan Y, Sondermann J, Schmidt M, Gomez-Varela D, Reiter L. Bruderer R, et al. Among authors: xuan y. Mol Cell Proteomics. 2017 Dec;16(12):2296-2309. doi: 10.1074/mcp.RA117.000314. Epub 2017 Oct 25. Mol Cell Proteomics. 2017. PMID: 29070702 Free PMC article.

2

Multiplexed peptide analysis using data-independent acquisition and Skyline.

Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ. Egertson JD, et al. Among authors: xuan y. Nat Protoc. 2015 Jun;10(6):887-903. doi: 10.1038/nprot.2015.055. Epub 2015 May 21. Nat Protoc. 2015. PMID: 25996789 Free PMC article.

3

Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.

Muntel J, Xuan Y, Berger ST, Reiter L, Bachur R, Kentsis A, Steen H. Muntel J, et al. Among authors: xuan y. J Proteome Res. 2015 Nov 6;14(11):4752-62. doi: 10.1021/acs.jproteome.5b00826. Epub 2015 Oct 22. J Proteome Res. 2015. PMID: 26423119 Free PMC article.

4

WITHDRAWN: Heralds of parallel MS: Data-independent acquisition surpassing sequential identification of data dependent acquisition in proteomics.

Bruderer R, Bernhardt OM, Gandhi T, Xuan Y, Sondermann J, Schmidt M, Gomez-Varela D, Reiter L. Bruderer R, et al. Among authors: xuan y. Mol Cell Proteomics. 2017 Apr 20:mcp.M116.065730. doi: 10.1074/mcp.M116.065730. Online ahead of print. Mol Cell Proteomics. 2017. PMID: 28428241 Free article.

5

Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition.

Huang T, Bruderer R, Muntel J, Xuan Y, Vitek O, Reiter L. Huang T, et al. Among authors: xuan y. Mol Cell Proteomics. 2020 Feb;19(2):421-430. doi: 10.1074/mcp.RA119.001705. Epub 2019 Dec 30. Mol Cell Proteomics. 2020. PMID: 31888964 Free PMC article.

6

DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery.

Zhu T, Zhu Y, Xuan Y, Gao H, Cai X, Piersma SR, Pham TV, Schelfhorst T, Haas RRGD, Bijnsdorp IV, Sun R, Yue L, Ruan G, Zhang Q, Hu M, Zhou Y, Van Houdt WJ, Le Large TYS, Cloos J, Wojtuszkiewicz A, Koppers-Lalic D, Böttger F, Scheepbouwer C, Brakenhoff RH, van Leenders GJLH, Ijzermans JNM, Martens JWM, Steenbergen RDM, Grieken NC, Selvarajan S, Mantoo S, Lee SS, Yeow SJY, Alkaff SMF, Xiang N, Sun Y, Yi X, Dai S, Liu W, Lu T, Wu Z, Liang X, Wang M, Shao Y, Zheng X, Xu K, Yang Q, Meng Y, Lu C, Zhu J, Zheng J, Wang B, Lou S, Dai Y, Xu C, Yu C, Ying H, Lim TK, Wu J, Gao X, Luan Z, Teng X, Wu P, Huang S, Tao Z, Iyer NG, Zhou S, Shao W, Lam H, Ma D, Ji J, Kon OL, Zheng S, Aebersold R, Jimenez CR, Guo T. Zhu T, et al. Among authors: xuan y. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):104-119. doi: 10.1016/j.gpb.2019.11.008. Epub 2020 Aug 12. Genomics Proteomics Bioinformatics. 2020. PMID: 32795611 Free PMC article.

7

High-field asymmetric waveform ion mobility spectrometry (FAIMS) coupled with high-resolution electron transfer dissociation mass spectrometry for the analysis of isobaric phosphopeptides.

Xuan Y, Creese AJ, Horner JA, Cooper HJ. Xuan Y, et al. Rapid Commun Mass Spectrom. 2009 Jul;23(13):1963-9. doi: 10.1002/rcm.4101. Rapid Commun Mass Spectrom. 2009. PMID: 19504484

8

A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation.

Bennike TB, Bellin MD, Xuan Y, Stensballe A, Møller FT, Beilman GJ, Levy O, Cruz-Monserrate Z, Andersen V, Steen J, Conwell DL, Steen H. Bennike TB, et al. Among authors: xuan y. J Proteome Res. 2018 May 4;17(5):1983-1992. doi: 10.1021/acs.jproteome.8b00111. Epub 2018 Apr 19. J Proteome Res. 2018. PMID: 29641209 Free PMC article.

9

Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids.

Martínez-Val A, Fort K, Koenig C, Van der Hoeven L, Franciosa G, Moehring T, Ishihama Y, Chen YJ, Makarov A, Xuan Y, Olsen JV. Martínez-Val A, et al. Among authors: xuan y. Nat Commun. 2023 Jun 16;14(1):3599. doi: 10.1038/s41467-023-39347-y. Nat Commun. 2023. PMID: 37328457 Free PMC article.

10

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies.

Xuan Y, Bateman NW, Gallien S, Goetze S, Zhou Y, Navarro P, Hu M, Parikh N, Hood BL, Conrads KA, Loosse C, Kitata RB, Piersma SR, Chiasserini D, Zhu H, Hou G, Tahir M, Macklin A, Khoo A, Sun X, Crossett B, Sickmann A, Chen YJ, Jimenez CR, Zhou H, Liu S, Larsen MR, Kislinger T, Chen Z, Parker BL, Cordwell SJ, Wollscheid B, Conrads TP. Xuan Y, et al. Nat Commun. 2020 Oct 16;11(1):5248. doi: 10.1038/s41467-020-18904-9. Nat Commun. 2020. PMID: 33067419 Free PMC article.

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