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6,309 results
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NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm.
Xue Y, Chen H, Jin C, Sun Z, Yao X. Xue Y, et al. BMC Bioinformatics. 2006 Oct 17;7:458. doi: 10.1186/1471-2105-7-458. BMC Bioinformatics. 2006. PMID: 17044919 Free PMC article.
GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes.
Liu Z, Yuan F, Ren J, Cao J, Zhou Y, Yang Q, Xue Y. Liu Z, et al. Among authors: xue y. PLoS One. 2012;7(3):e34370. doi: 10.1371/journal.pone.0034370. Epub 2012 Mar 29. PLoS One. 2012. PMID: 22479614 Free PMC article.
GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection.
Xue Y, Liu Z, Cao J, Ma Q, Gao X, Wang Q, Jin C, Zhou Y, Wen L, Ren J. Xue Y, et al. Protein Eng Des Sel. 2011 Mar;24(3):255-60. doi: 10.1093/protein/gzq094. Epub 2010 Nov 8. Protein Eng Des Sel. 2011. PMID: 21062758
GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm.
Xue Y, Liu Z, Gao X, Jin C, Wen L, Yao X, Ren J. Xue Y, et al. PLoS One. 2010 Jun 24;5(6):e11290. doi: 10.1371/journal.pone.0011290. PLoS One. 2010. PMID: 20585580 Free PMC article.
SUMOsp: a web server for sumoylation site prediction.
Xue Y, Zhou F, Fu C, Xu Y, Yao X. Xue Y, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W254-7. doi: 10.1093/nar/gkl207. Nucleic Acids Res. 2006. PMID: 16845005 Free PMC article.
Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method.
Li A, Xue Y, Jin C, Wang M, Yao X. Li A, et al. Among authors: xue y. Biochem Biophys Res Commun. 2006 Dec 1;350(4):818-24. doi: 10.1016/j.bbrc.2006.08.199. Epub 2006 Oct 2. Biochem Biophys Res Commun. 2006. PMID: 17045240 Free PMC article.
CPLA 1.0: an integrated database of protein lysine acetylation.
Liu Z, Cao J, Gao X, Zhou Y, Wen L, Yang X, Yao X, Ren J, Xue Y. Liu Z, et al. Among authors: xue y. Nucleic Acids Res. 2011 Jan;39(Database issue):D1029-34. doi: 10.1093/nar/gkq939. Epub 2010 Nov 8. Nucleic Acids Res. 2011. PMID: 21059677 Free PMC article.
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
Zhou F, Xue Y, Yao X, Xu Y. Zhou F, et al. Among authors: xue y. Bioinformatics. 2006 Apr 1;22(7):894-6. doi: 10.1093/bioinformatics/btl013. Epub 2006 Jan 24. Bioinformatics. 2006. PMID: 16434441
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
Xue Y, Li A, Wang L, Feng H, Yao X. Xue Y, et al. BMC Bioinformatics. 2006 Mar 20;7:163. doi: 10.1186/1471-2105-7-163. BMC Bioinformatics. 2006. PMID: 16549034 Free PMC article.
Prediction of novel pre-microRNAs with high accuracy through boosting and SVM.
Zhang Y, Yang Y, Zhang H, Jiang X, Xu B, Xue Y, Cao Y, Zhai Q, Zhai Y, Xu M, Cooke HJ, Shi Q. Zhang Y, et al. Among authors: xue y. Bioinformatics. 2011 May 15;27(10):1436-7. doi: 10.1093/bioinformatics/btr148. Epub 2011 Mar 23. Bioinformatics. 2011. PMID: 21436129
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