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Observing the overall rocking motion of a protein in a crystal.
Ma P, Xue Y, Coquelle N, Haller JD, Yuwen T, Ayala I, Mikhailovskii O, Willbold D, Colletier JP, Skrynnikov NR, Schanda P. Ma P, et al. Nat Commun. 2015 Oct 5;6:8361. doi: 10.1038/ncomms9361. Nat Commun. 2015. PMID: 26436197 Free PMC article.
Microsecond time-scale conformational exchange in proteins: using long molecular dynamics trajectory to simulate NMR relaxation dispersion data.
Xue Y, Ward JM, Yuwen T, Podkorytov IS, Skrynnikov NR. Xue Y, et al. J Am Chem Soc. 2012 Feb 8;134(5):2555-62. doi: 10.1021/ja206442c. Epub 2012 Jan 27. J Am Chem Soc. 2012. PMID: 22206299
Motion of a disordered polypeptide chain as studied by paramagnetic relaxation enhancements, 15N relaxation, and molecular dynamics simulations: how fast is segmental diffusion in denatured ubiquitin?
Xue Y, Skrynnikov NR. Xue Y, et al. J Am Chem Soc. 2011 Sep 21;133(37):14614-28. doi: 10.1021/ja201605c. Epub 2011 Aug 24. J Am Chem Soc. 2011. PMID: 21819149
Role of Electrostatic Interactions in Binding of Peptides and Intrinsically Disordered Proteins to Their Folded Targets: 2. The Model of Encounter Complex Involving the Double Mutant of the c-Crk N-SH3 Domain and Peptide Sos.
Yuwen T, Xue Y, Skrynnikov NR. Yuwen T, et al. Biochemistry. 2016 Mar 29;55(12):1784-800. doi: 10.1021/acs.biochem.5b01283. Epub 2016 Mar 14. Biochemistry. 2016. PMID: 26910732
In the first part of this work (paper 1, Xue, Y. et al. Biochemistry 2014 , 53 , 6473 ), we have studied the complex between the 10-residue peptide Sos and N-terminal SH3 domain from adaptor protein c-Crk. ...
In the first part of this work (paper 1, Xue, Y. et al. Biochemistry 2014 , 53 , 6473 ), we have studied the complex between t …
Role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between the c-Crk N-SH3 domain and the peptide Sos.
Xue Y, Yuwen T, Zhu F, Skrynnikov NR. Xue Y, et al. Biochemistry. 2014 Oct 21;53(41):6473-95. doi: 10.1021/bi500904f. Epub 2014 Oct 7. Biochemistry. 2014. PMID: 25207671
Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.
Kurauskas V, Izmailov SA, Rogacheva ON, Hessel A, Ayala I, Woodhouse J, Shilova A, Xue Y, Yuwen T, Coquelle N, Colletier JP, Skrynnikov NR, Schanda P. Kurauskas V, et al. Nat Commun. 2017 Jul 27;8(1):145. doi: 10.1038/s41467-017-00165-8. Nat Commun. 2017. PMID: 28747759 Free PMC article.
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