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Evolutionary aspects of plastid proteins involved in transcription: the transcription of a tiny genome is mediated by a complicated machinery.
Yagi Y, Shiina T. Yagi Y, et al. Transcription. 2012 Nov-Dec;3(6):290-4. doi: 10.4161/trns.21810. Epub 2012 Aug 14. Transcription. 2012. PMID: 22889841 Free PMC article.
Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants.
Nakamura T, Yagi Y, Kobayashi K. Nakamura T, et al. Among authors: yagi y. Plant Cell Physiol. 2012 Jul;53(7):1171-9. doi: 10.1093/pcp/pcs069. Epub 2012 May 9. Plant Cell Physiol. 2012. PMID: 22576772 Review.
Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase.
Yagi Y, Ishizaki Y, Nakahira Y, Tozawa Y, Shiina T. Yagi Y, et al. Proc Natl Acad Sci U S A. 2012 May 8;109(19):7541-6. doi: 10.1073/pnas.1119403109. Epub 2012 Apr 23. Proc Natl Acad Sci U S A. 2012. PMID: 22529394 Free PMC article.
Comprehensive Prediction of Target RNA Editing Sites for PLS-Class PPR Proteins in Arabidopsis thaliana.
Kobayashi T, Yagi Y, Nakamura T. Kobayashi T, et al. Among authors: yagi y. Plant Cell Physiol. 2019 Apr 1;60(4):862-874. doi: 10.1093/pcp/pcy251. Plant Cell Physiol. 2019. PMID: 30605550
Development of Genome Engineering Tools from Plant-Specific PPR Proteins Using Animal Cultured Cells.
Kobayashi T, Yagi Y, Nakamura T. Kobayashi T, et al. Among authors: yagi y. Methods Mol Biol. 2016;1469:147-55. doi: 10.1007/978-1-4939-4931-1_11. Methods Mol Biol. 2016. PMID: 27557692
Recent advances in the study of chloroplast gene expression and its evolution.
Yagi Y, Shiina T. Yagi Y, et al. Front Plant Sci. 2014 Feb 25;5:61. doi: 10.3389/fpls.2014.00061. eCollection 2014. Front Plant Sci. 2014. PMID: 24611069 Free PMC article. Review.
Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.
Yagi Y, Hayashi S, Kobayashi K, Hirayama T, Nakamura T. Yagi Y, et al. PLoS One. 2013;8(3):e57286. doi: 10.1371/journal.pone.0057286. Epub 2013 Mar 5. PLoS One. 2013. PMID: 23472078 Free PMC article.
The potential for manipulating RNA with pentatricopeptide repeat proteins.
Yagi Y, Nakamura T, Small I. Yagi Y, et al. Plant J. 2014 Jun;78(5):772-82. doi: 10.1111/tpj.12377. Epub 2014 Jan 29. Plant J. 2014. PMID: 24471963
Pentatricopeptide repeat proteins involved in plant organellar RNA editing.
Yagi Y, Tachikawa M, Noguchi H, Satoh S, Obokata J, Nakamura T. Yagi Y, et al. RNA Biol. 2013;10(9):1419-25. doi: 10.4161/rna.24908. Epub 2013 May 3. RNA Biol. 2013. PMID: 23669716 Free PMC article.
Heterogeneity of the 5'-end in plant mRNA may be involved in mitochondrial translation.
Kazama T, Yagi Y, Toriyama K, Nakamura T. Kazama T, et al. Among authors: yagi y. Front Plant Sci. 2013 Dec 17;4:517. doi: 10.3389/fpls.2013.00517. eCollection 2013. Front Plant Sci. 2013. PMID: 24381580 Free PMC article. No abstract available.
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