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MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. Among authors: yamane n. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.
Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae.
Terabayashi Y, Sano M, Yamane N, Marui J, Tamano K, Sagara J, Dohmoto M, Oda K, Ohshima E, Tachibana K, Higa Y, Ohashi S, Koike H, Machida M. Terabayashi Y, et al. Among authors: yamane n. Fungal Genet Biol. 2010 Dec;47(12):953-61. doi: 10.1016/j.fgb.2010.08.014. Epub 2010 Sep 16. Fungal Genet Biol. 2010. PMID: 20849972
Kojic acid biosynthesis in Aspergillus oryzae is regulated by a Zn(II)(2)Cys(6) transcriptional activator and induced by kojic acid at the transcriptional level.
Marui J, Yamane N, Ohashi-Kunihiro S, Ando T, Terabayashi Y, Sano M, Ohashi S, Ohshima E, Tachibana K, Higa Y, Nishimura M, Koike H, Machida M. Marui J, et al. Among authors: yamane n. J Biosci Bioeng. 2011 Jul;112(1):40-3. doi: 10.1016/j.jbiosc.2011.03.010. Epub 2011 Apr 21. J Biosci Bioeng. 2011. PMID: 21514215
Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.
Umemura M, Koike H, Yamane N, Koyama Y, Satou Y, Kikuzato I, Teruya M, Tsukahara M, Imada Y, Wachi Y, Miwa Y, Yano S, Tamano K, Kawarabayasi Y, Fujimori KE, Machida M, Hirano T. Umemura M, et al. Among authors: yamane n. DNA Res. 2012 Oct;19(5):375-82. doi: 10.1093/dnares/dss019. Epub 2012 Aug 21. DNA Res. 2012. PMID: 22912434 Free PMC article.
Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation.
Tamano K, Sano M, Yamane N, Terabayashi Y, Toda T, Sunagawa M, Koike H, Hatamoto O, Umitsuki G, Takahashi T, Koyama Y, Asai R, Abe K, Machida M. Tamano K, et al. Among authors: yamane n. Fungal Genet Biol. 2008 Feb;45(2):139-51. doi: 10.1016/j.fgb.2007.09.005. Epub 2007 Sep 25. Fungal Genet Biol. 2008. PMID: 17967552
Genomics of industrial Aspergilli and comparison with toxigenic relatives.
Machida M, Terabayashi Y, Sano M, Yamane N, Tamano K, Payne GA, Yu J, Cleveland TE, Nierman WC. Machida M, et al. Among authors: yamane n. Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008 Sep;25(9):1147-51. doi: 10.1080/02652030802273114. Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008. PMID: 18798040
Development of an automated SNP analysis method using a paramagnetic beads handling robot.
Hagiwara H, Sawakami-Kobayashi K, Yamamoto M, Iwasaki S, Sugiura M, Abe H, Kunihiro-Ohashi S, Takase K, Yamane N, Kato K, Son R, Nakamura M, Segawa O, Yoshida M, Yohda M, Tajima H, Kobori M, Takahama Y, Itakura M, Machida M. Hagiwara H, et al. Among authors: yamane n. Biotechnol Bioeng. 2007 Oct 1;98(2):420-8. doi: 10.1002/bit.21380. Biotechnol Bioeng. 2007. PMID: 17335059
Discovery of novel non-peptide thrombopoietin mimetic compounds that induce megakaryocytopoiesis.
Yamane N, Takahashi K, Tanaka Y, Kato K, Takayama M, Ohyabu N, Shiota T, Takenaka H, Yoshida Y, Hara S, Murashi T, Nakamura E, Nishitani Y, Ishizaki J, Yamane S, Nagata K, Koizumi K, Yutsudo T, Suzuki R, Itoh T, Takemoto H. Yamane N, et al. Among authors: yamane s. Biosci Rep. 2008 Oct;28(5):275-85. doi: 10.1042/BSR20080086. Biosci Rep. 2008. PMID: 18620546
291 results