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Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
Yamasaki M, Moriwaki S, Miyake O, Hashimoto W, Murata K, Mikami B. Yamasaki M, et al. J Biol Chem. 2004 Jul 23;279(30):31863-72. doi: 10.1074/jbc.M402466200. Epub 2004 May 10. J Biol Chem. 2004. PMID: 15136569
Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099.
Yoshikane Y, Yokochi N, Yamasaki M, Mizutani K, Ohnishi K, Mikami B, Hayashi H, Yagi T. Yoshikane Y, et al. J Biol Chem. 2008 Jan 11;283(2):1120-7. doi: 10.1074/jbc.M708061200. Epub 2007 Nov 6. J Biol Chem. 2008. PMID: 17989071
Crystallization and preliminary X-ray analysis of an exotype alginate lyase Atu3025 from Agrobacterium tumefaciens strain C58, a member of polysaccharide lyase family 15.
Ochiai A, Yamasaki M, Mikami B, Hashimoto W, Murata K. Ochiai A, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 May 1;62(Pt 5):486-8. doi: 10.1107/S1744309106014333. Epub 2006 Apr 28. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006. PMID: 16682783 Free PMC article.
Crystallization and preliminary X-ray analysis of pyridoxal 4-dehydrogenase, the second enzyme in degradation pathway I of pyridoxine.
Yokochi N, Yoshikane Y, Yagi T, Yamasaki M, Mikami B. Yokochi N, et al. Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):2061-2. doi: 10.1107/S0907444904021754. Epub 2004 Oct 20. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15502327
PLDH from Microbacterium luteolum, a dimeric protein with a subunit molecular weight of 38 kDa, was crystallized at 277 K in a drop solution comprising 15%(w/v) polyethylene glycol 4000, 0.15 M sodium acetate, 7.5 mM n-octyl-beta-D-glucoside and 0.075 M Tris-HCl pH …
PLDH from Microbacterium luteolum, a dimeric protein with a subunit molecular weight of 38 kDa, was crystallized at 277 K in a drop solution …
NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex.
Mori S, Yamasaki M, Maruyama Y, Momma K, Kawai S, Hashimoto W, Mikami B, Murata K. Mori S, et al. Biochem Biophys Res Commun. 2005 Feb 11;327(2):500-8. doi: 10.1016/j.bbrc.2004.11.163. Biochem Biophys Res Commun. 2005. PMID: 15629142
Protein-engineering study of contribution of conceivable D-serine residues to the thermostabilization of ovalbumin under alkaline conditions.
Takahashi N, Maeda M, Yamasaki M, Mikami B. Takahashi N, et al. Chem Biodivers. 2010 Jun;7(6):1634-43. doi: 10.1002/cbdv.200900305. Chem Biodivers. 2010. PMID: 20564677
During storage of shell eggs, an egg-white protein, ovalbumin is converted into a molecular species with higher thermostability (Delta T(m)=8 degrees), which is named as S-ovalbumin. ...When these residues were replaced with valine, which has a slower racemization rate, De …
During storage of shell eggs, an egg-white protein, ovalbumin is converted into a molecular species with higher thermostability (Delta T( …
Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III.
Mikami B, Ban M, Suzuki S, Yoon HJ, Miyake O, Yamasaki M, Ogura K, Maruyama Y, Hashimoto W, Murata K. Mikami B, et al. Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1207-16. doi: 10.1107/S090744491202495X. Epub 2012 Aug 18. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22948922
Super-channel in bacteria: structural and functional aspects of a novel biosystem for the import and depolymerization of macromolecules.
Hashimoto W, Yamasaki M, Itoh T, Momma K, Mikami B, Murata K. Hashimoto W, et al. J Biosci Bioeng. 2004;98(6):399-413. doi: 10.1016/S1389-1723(05)00304-X. J Biosci Bioeng. 2004. PMID: 16233728
Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens.
Ochiai A, Yamasaki M, Mikami B, Hashimoto W, Murata K. Ochiai A, et al. J Biol Chem. 2010 Aug 6;285(32):24519-28. doi: 10.1074/jbc.M110.125450. Epub 2010 May 27. J Biol Chem. 2010. PMID: 20507980 Free PMC article.
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