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Validation of tandem mass spectrometry database search results using DTASelect.
Cociorva D, L Tabb D, Yates JR. Cociorva D, et al. Among authors: yates jr. Curr Protoc Bioinformatics. 2007 Jan;Chapter 13:Unit 13.4. doi: 10.1002/0471250953.bi1304s16. Curr Protoc Bioinformatics. 2007. PMID: 18428785
High-temperature protein mass mapping using a thermophilic protease.
Bark SJ, Muster N, Yates JR 3rd, Siuzdak G. Bark SJ, et al. Among authors: yates jr 3rd. J Am Chem Soc. 2001 Feb 28;123(8):1774-5. doi: 10.1021/ja002909n. J Am Chem Soc. 2001. PMID: 11456785 No abstract available.
Proteomics: analytical tools and techniques.
MacCoss MJ, Yates JR 3rd. MacCoss MJ, et al. Among authors: yates jr 3rd. Curr Opin Clin Nutr Metab Care. 2001 Sep;4(5):369-75. doi: 10.1097/00075197-200109000-00006. Curr Opin Clin Nutr Metab Care. 2001. PMID: 11568497 Review.
Multidimensional separations for protein/peptide analysis in the post-genomic era.
Liu H, Lin D, Yates JR 3rd. Liu H, et al. Among authors: yates jr 3rd. Biotechniques. 2002 Apr;32(4):898, 900, 902 passim. doi: 10.2144/02324pt01. Biotechniques. 2002. PMID: 11962611 Review.
Analysis of quantitative proteomic data generated via multidimensional protein identification technology.
Washburn MP, Ulaszek R, Deciu C, Schieltz DM, Yates JR 3rd. Washburn MP, et al. Among authors: yates jr 3rd. Anal Chem. 2002 Apr 1;74(7):1650-7. doi: 10.1021/ac015704l. Anal Chem. 2002. PMID: 12043600
Proteomic characterization of wheat amyloplasts using identification of proteins by tandem mass spectrometry.
Andon NL, Hollingworth S, Koller A, Greenland AJ, Yates JR 3rd, Haynes PA. Andon NL, et al. Among authors: yates jr 3rd. Proteomics. 2002 Sep;2(9):1156-68. doi: 10.1002/1615-9861(200209)2:9<1156::AID-PROT1156>3.0.CO;2-4. Proteomics. 2002. PMID: 12362334
Shotgun proteomics and biomarker discovery.
McDonald WH, Yates JR 3rd. McDonald WH, et al. Among authors: yates jr 3rd. Dis Markers. 2002;18(2):99-105. doi: 10.1155/2002/505397. Dis Markers. 2002. PMID: 12364816 Free PMC article. Review.
Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5.
Yamaguchi K, Prieto S, Beligni MV, Haynes PA, McDonald WH, Yates JR 3rd, Mayfield SP. Yamaguchi K, et al. Among authors: yates jr 3rd. Plant Cell. 2002 Nov;14(11):2957-74. doi: 10.1105/tpc.004341. Plant Cell. 2002. PMID: 12417713 Free PMC article.
Probability-based validation of protein identifications using a modified SEQUEST algorithm.
MacCoss MJ, Wu CC, Yates JR 3rd. MacCoss MJ, et al. Among authors: yates jr 3rd. Anal Chem. 2002 Nov 1;74(21):5593-9. doi: 10.1021/ac025826t. Anal Chem. 2002. PMID: 12433093
Large-scale protein identification using mass spectrometry.
Lin D, Tabb DL, Yates JR 3rd. Lin D, et al. Among authors: yates jr 3rd. Biochim Biophys Acta. 2003 Mar 21;1646(1-2):1-10. doi: 10.1016/s1570-9639(02)00546-0. Biochim Biophys Acta. 2003. PMID: 12637006 Review.
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