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Voices in methods development.
Anikeeva P, Boyden E, Brangwynne C, Cissé II, Fiehn O, Fromme P, Gingras AC, Greene CS, Heard E, Hell SW, Hillman E, Jensen GJ, Karchin R, Kiessling LL, Kleinstiver BP, Knight R, Kukura P, Lancaster MA, Loman N, Looger L, Lundberg E, Luo Q, Miyawaki A, Myers EW Jr, Nolan GP, Picotti P, Reik W, Sauer M, Shalek AK, Shendure J, Slavov N, Tanay A, Troyanskaya O, van Valen D, Wang HW, Yi C, Yin P, Zernicka-Goetz M, Zhuang X. Anikeeva P, et al. Among authors: Yi C. Nat Methods. 2019 Oct;16(10):945-951. doi: 10.1038/s41592-019-0585-6. Nat Methods. 2019. PMID: 31562479 Free PMC article.
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, Hicks LM, Lahn BT, Jin P, He C. Song CX, et al. Among authors: Yi C. Nat Biotechnol. 2011 Jan;29(1):68-72. doi: 10.1038/nbt.1732. Epub 2010 Dec 12. Nat Biotechnol. 2011. PMID: 21151123 Free PMC article.
Duplex interrogation by a direct DNA repair protein in search of base damage.
Yi C, Chen B, Qi B, Zhang W, Jia G, Zhang L, Li CJ, Dinner AR, Yang CG, He C. Yi C, et al. Nat Struct Mol Biol. 2012 Jun 3;19(7):671-6. doi: 10.1038/nsmb.2320. Nat Struct Mol Biol. 2012. PMID: 22659876 Free PMC article.
Efficient and quantitative high-throughput tRNA sequencing.
Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Zheng G, et al. Among authors: Yi C. Nat Methods. 2015 Sep;12(9):835-837. doi: 10.1038/nmeth.3478. Epub 2015 Jul 27. Nat Methods. 2015. PMID: 26214130 Free PMC article.
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.
Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi C. Xia B, et al. Among authors: Yi C. Nat Methods. 2015 Nov;12(11):1047-50. doi: 10.1038/nmeth.3569. Epub 2015 Sep 7. Nat Methods. 2015. PMID: 26344045 Free PMC article.
Here we present fC-CET, a bisulfite-free method for whole-genome analysis of 5fC based on selective chemical labeling of 5fC and subsequent C-to-T transition during PCR. ...
Here we present fC-CET, a bisulfite-free method for whole-genome analysis of 5fC based on selective chemical labeling of 5fC and subsequent …
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