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An efficient algorithm for optimizing whole genome alignment with noise.
Wong PW, Lam TW, Lu N, Ting HF, Yiu SM. Wong PW, et al. Bioinformatics. 2004 Nov 1;20(16):2676-84. doi: 10.1093/bioinformatics/bth308. Epub 2004 May 14. Bioinformatics. 2004. PMID: 15145812
Filtering of ineffective siRNAs and improved siRNA design tool.
Yiu SM, Wong PW, Lam TW, Mui YC, Kung HF, Lin M, Cheung YT. Yiu SM, et al. Bioinformatics. 2005 Jan 15;21(2):144-51. doi: 10.1093/bioinformatics/bth498. Epub 2004 Aug 27. Bioinformatics. 2005. PMID: 15333460
The mutated subsequence problem and locating conserved genes.
Chan HL, Lam TW, Sung WK, Wong PW, Yiu SM, Fan X. Chan HL, et al. Bioinformatics. 2005 May 15;21(10):2271-8. doi: 10.1093/bioinformatics/bti371. Epub 2005 Mar 3. Bioinformatics. 2005. PMID: 15746277
Finding motifs with insufficient number of strong binding sites.
Leung HC, Chin FY, Yiu SM, Rosenfeld R, Tsang WW. Leung HC, et al. J Comput Biol. 2005 Jul-Aug;12(6):686-701. doi: 10.1089/cmb.2005.12.686. J Comput Biol. 2005. PMID: 16108711
Compressed indexing and local alignment of DNA.
Lam TW, Sung WK, Tam SL, Wong CK, Yiu SM. Lam TW, et al. Bioinformatics. 2008 Mar 15;24(6):791-7. doi: 10.1093/bioinformatics/btn032. Epub 2008 Jan 28. Bioinformatics. 2008. PMID: 18227115
Filtering of false positive microRNA candidates by a clustering-based approach.
Leung WS, Lin MC, Cheung DW, Yiu SM. Leung WS, et al. BMC Bioinformatics. 2008 Dec 12;9 Suppl 12(Suppl 12):S3. doi: 10.1186/1471-2105-9-S12-S3. BMC Bioinformatics. 2008. PMID: 19091026 Free PMC article.
Predicting protein complexes from PPI data: a core-attachment approach.
Leung HC, Xiang Q, Yiu SM, Chin FY. Leung HC, et al. J Comput Biol. 2009 Feb;16(2):133-44. doi: 10.1089/cmb.2008.01TT. J Comput Biol. 2009. PMID: 19193141
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