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Knockdown of recA gene expression by artificial small RNAs in Escherichia coli.
Sharma V, Sakai Y, Smythe KA, Yokobayashi Y. Sharma V, et al. Among authors: yokobayashi y. Biochem Biophys Res Commun. 2013 Jan 4;430(1):256-9. doi: 10.1016/j.bbrc.2012.10.141. Epub 2012 Nov 20. Biochem Biophys Res Commun. 2013. PMID: 23178465
In vivo screening of artificial small RNAs for silencing endogenous genes in Escherichia coli.
Sharma V, Yokobayashi Y. Sharma V, et al. Among authors: yokobayashi y. Methods Mol Biol. 2013;1073:75-84. doi: 10.1007/978-1-62703-625-2_8. Methods Mol Biol. 2013. PMID: 23996441
Synthetic mammalian riboswitches based on guanine aptazyme.
Nomura Y, Kumar D, Yokobayashi Y. Nomura Y, et al. Among authors: yokobayashi y. Chem Commun (Camb). 2012 Jul 21;48(57):7215-7. doi: 10.1039/c2cc33140c. Epub 2012 Jun 13. Chem Commun (Camb). 2012. PMID: 22692003
Aptazyme-based riboswitches and logic gates in mammalian cells.
Nomura Y, Yokobayashi Y. Nomura Y, et al. Among authors: yokobayashi y. Methods Mol Biol. 2015;1316:141-8. doi: 10.1007/978-1-4939-2730-2_12. Methods Mol Biol. 2015. PMID: 25967059
Dual genetic selection of synthetic riboswitches in Escherichia coli.
Nomura Y, Yokobayashi Y. Nomura Y, et al. Among authors: yokobayashi y. Methods Mol Biol. 2014;1111:131-40. doi: 10.1007/978-1-62703-755-6_9. Methods Mol Biol. 2014. PMID: 24549616
Controlling mammalian gene expression by allosteric hepatitis delta virus ribozymes.
Nomura Y, Zhou L, Miu A, Yokobayashi Y. Nomura Y, et al. Among authors: yokobayashi y. ACS Synth Biol. 2013 Dec 20;2(12):684-9. doi: 10.1021/sb400037a. Epub 2013 May 22. ACS Synth Biol. 2013. PMID: 23697539 Free PMC article.
Engineering artificial small RNAs for conditional gene silencing in Escherichia coli.
Sharma V, Yamamura A, Yokobayashi Y. Sharma V, et al. Among authors: yokobayashi y. ACS Synth Biol. 2012 Jan 20;1(1):6-13. doi: 10.1021/sb200001q. Epub 2011 Aug 29. ACS Synth Biol. 2012. PMID: 23651005
Enzymatic probing analysis of an engineered riboswitch reveals multiple off conformations.
Muranaka N, Sharma V, Yokobayashi Y. Muranaka N, et al. Among authors: yokobayashi y. Nucleosides Nucleotides Nucleic Acids. 2011 Sep;30(9):696-705. doi: 10.1080/15257770.2011.597367. Nucleosides Nucleotides Nucleic Acids. 2011. PMID: 21902472
A synthetic riboswitch with chemical band-pass response.
Muranaka N, Yokobayashi Y. Muranaka N, et al. Among authors: yokobayashi y. Chem Commun (Camb). 2010 Sep 28;46(36):6825-7. doi: 10.1039/c0cc01438a. Epub 2010 Aug 19. Chem Commun (Camb). 2010. PMID: 20721392
Posttranscriptional signal integration of engineered riboswitches yields band-pass output.
Muranaka N, Yokobayashi Y. Muranaka N, et al. Among authors: yokobayashi y. Angew Chem Int Ed Engl. 2010 Jun 21;49(27):4653-5. doi: 10.1002/anie.201001482. Angew Chem Int Ed Engl. 2010. PMID: 20480477 No abstract available.
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