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Page 1
Did you mean cork dm[Author] (13 results)?
AmberTools.
Case DA, Aktulga HM, Belfon K, Cerutti DS, Cisneros GA, Cruzeiro VWD, Forouzesh N, Giese TJ, Götz AW, Gohlke H, Izadi S, Kasavajhala K, Kaymak MC, King E, Kurtzman T, Lee TS, Li P, Liu J, Luchko T, Luo R, Manathunga M, Machado MR, Nguyen HM, O'Hearn KA, Onufriev AV, Pan F, Pantano S, Qi R, Rahnamoun A, Risheh A, Schott-Verdugo S, Shajan A, Swails J, Wang J, Wei H, Wu X, Wu Y, Zhang S, Zhao S, Zhu Q, Cheatham TE 3rd, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr. Case DA, et al. Among authors: york dm. J Chem Inf Model. 2023 Oct 23;63(20):6183-6191. doi: 10.1021/acs.jcim.3c01153. Epub 2023 Oct 8. J Chem Inf Model. 2023. PMID: 37805934 Free PMC article.
Enzyme transition states from theory and experiment.
Harris ME, Piccirilli JA, York DM. Harris ME, et al. Among authors: york dm. Biochim Biophys Acta. 2015 Nov;1854(11):1727-8. doi: 10.1016/j.bbapap.2015.08.006. Epub 2015 Aug 22. Biochim Biophys Acta. 2015. PMID: 26302659 No abstract available.
ACES: Optimized Alchemically Enhanced Sampling.
Lee TS, Tsai HC, Ganguly A, York DM. Lee TS, et al. Among authors: york dm. J Chem Theory Comput. 2023 Jan 11:10.1021/acs.jctc.2c00697. doi: 10.1021/acs.jctc.2c00697. Online ahead of print. J Chem Theory Comput. 2023. PMID: 36630672 Free PMC article.
Recent Developments in Amber Biomolecular Simulations.
Case DA, Cerutti DS, Cruzeiro VWD, Darden TA, Duke RE, Ghazimirsaeed M, Giambaşu GM, Giese TJ, Götz AW, Harris JA, Kasavajhala K, Lee TS, Li Z, Lin C, Liu J, Miao Y, Salomon-Ferrrer R, Shen J, Snyder R, Swails J, Walker RC, Wang J, Wu X, Zeng J, Cheatham Iii TE, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr. Case DA, et al. Among authors: york dm. J Chem Inf Model. 2025 Aug 11;65(15):7835-7843. doi: 10.1021/acs.jcim.5c01063. Epub 2025 Jul 29. J Chem Inf Model. 2025. PMID: 40728386 Free PMC article.
CHARMM: the biomolecular simulation program.
Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. Among authors: york dm. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.
Update on Advocacy.
York DM. York DM. J Nucl Med Technol. 2021 Dec;49(4):8A. J Nucl Med Technol. 2021. PMID: 34862265 Free article. No abstract available.
SNMMI-TS Nuclear Medicine Technology Universal AES/CI Handbook.
Johnson SL, Ugorowski MJ, Botkin C, Deimer D, Bolin JD, Frye SA, Garrard RM, Kelkis D, Prekeges JL, York DM, Shanbrun L, Voslar AM, Gutierrez NG, Cross C, Kamm JE. Johnson SL, et al. Among authors: york dm. J Nucl Med Technol. 2024 Dec 4;52(4):285-298. doi: 10.2967/jnmt.124.268858. J Nucl Med Technol. 2024. PMID: 39632060 Free article. No abstract available.
187 results