Yoshikuni Y - Search Results

1

Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere.

Doud DFR, Bowers RM, Schulz F, De Raad M, Deng K, Tarver A, Glasgow E, Vander Meulen K, Fox B, Deutsch S, Yoshikuni Y, Northen T, Hedlund BP, Singer SW, Ivanova N, Woyke T. Doud DFR, et al. Among authors: yoshikuni y. ISME J. 2020 Mar;14(3):659-675. doi: 10.1038/s41396-019-0557-y. Epub 2019 Nov 21. ISME J. 2020. PMID: 31754206 Free PMC article.

2

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC. Mukherjee S, et al. Among authors: yoshikuni y. Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12. Nat Biotechnol. 2017. PMID: 28604660

3

An integrated workflow for phenazine-modifying enzyme characterization.

Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, Dangl JL, Pati A, Weller D, Northen TR, Cheng JF, Mouncey NJ, Deutsch S, Yoshikuni Y. Coates RC, et al. Among authors: yoshikuni y. J Ind Microbiol Biotechnol. 2018 Jul;45(7):567-577. doi: 10.1007/s10295-018-2025-5. Epub 2018 Mar 15. J Ind Microbiol Biotechnol. 2018. PMID: 29546662

4

Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions.

Gao J, Sasse J, Lewald KM, Zhalnina K, Cornmesser LT, Duncombe TA, Yoshikuni Y, Vogel JP, Firestone MK, Northen TR. Gao J, et al. Among authors: yoshikuni y. J Vis Exp. 2018 Apr 10;(134):57170. doi: 10.3791/57170. J Vis Exp. 2018. PMID: 29708529 Free PMC article.

5

Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes.

Huang J, Yu Z, Groom J, Cheng JF, Tarver A, Yoshikuni Y, Chistoserdova L. Huang J, et al. Among authors: yoshikuni y. ISME J. 2019 Aug;13(8):2005-2017. doi: 10.1038/s41396-019-0414-z. Epub 2019 Apr 5. ISME J. 2019. PMID: 30952993 Free PMC article.

6

CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.

Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, De Raad M, Silva L, Luhrs A, Lubbe A, Hoyt DW, Francavilla C, Otani H, Deutsch S, Washton NM, Rubin EM, Mouncey NJ, Visel A, Northen T, Cheng JF, Bode HB, Yoshikuni Y. Wang G, et al. Among authors: yoshikuni y. Nat Microbiol. 2019 Dec;4(12):2498-2510. doi: 10.1038/s41564-019-0573-8. Epub 2019 Oct 14. Nat Microbiol. 2019. PMID: 31611640

7

CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant-Microbe Interactions.

Wang B, Zhao Z, Jabusch LK, Chiniquy DM, Ono K, Conway JM, Zhang Z, Wang G, Robinson D, Cheng JF, Dangl JL, Northen TR, Yoshikuni Y. Wang B, et al. Among authors: yoshikuni y. ACS Synth Biol. 2020 Sep 18;9(9):2610-2615. doi: 10.1021/acssynbio.0c00280. Epub 2020 Aug 13. ACS Synth Biol. 2020. PMID: 32786359 Free article.

8

Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions.

Jabusch LK, Kim PW, Chiniquy D, Zhao Z, Wang B, Bowen B, Kang AJ, Yoshikuni Y, Deutschbauer AM, Singh AK, Northen TR. Jabusch LK, et al. Among authors: yoshikuni y. Int J Mol Sci. 2021 Jul 23;22(15):7880. doi: 10.3390/ijms22157880. Int J Mol Sci. 2021. PMID: 34360661 Free PMC article.

9

CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria.

Ke J, Robinson D, Wu ZY, Kuftin A, Louie K, Kosina S, Northen T, Cheng JF, Yoshikuni Y. Ke J, et al. Among authors: yoshikuni y. Cell Chem Biol. 2022 Apr 21;29(4):696-710.e4. doi: 10.1016/j.chembiol.2021.08.009. Epub 2021 Sep 10. Cell Chem Biol. 2022. PMID: 34508657 Free article.

10

Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE.

Ke J, Zhao Z, Coates CR, Hadjithomas M, Kuftin A, Louie K, Weller D, Thomashow L, Mouncey NJ, Northen TR, Yoshikuni Y. Ke J, et al. Among authors: yoshikuni y. Metab Eng. 2022 Jan;69:188-197. doi: 10.1016/j.ymben.2021.11.012. Epub 2021 Dec 8. Metab Eng. 2022. PMID: 34890798

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

112 results

Search Page