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23,256 results
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Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.
Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. Degnan PH, et al. Among authors: yu y. Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):9063-8. doi: 10.1073/pnas.0900194106. Epub 2009 May 18. Proc Natl Acad Sci U S A. 2009. PMID: 19451630 Free PMC article.
The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.
Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. Fan C, et al. Among authors: yu y. Mol Plant. 2008 Sep;1(5):839-50. doi: 10.1093/mp/ssn050. Epub 2008 Aug 22. Mol Plant. 2008. PMID: 19825586 Free PMC article.
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S. Wing RA, et al. Among authors: yu y. Plant Mol Biol. 2005 Sep;59(1):53-62. doi: 10.1007/s11103-004-6237-x. Plant Mol Biol. 2005. PMID: 16217601
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Ammiraju JS, et al. Among authors: yu y. Theor Appl Genet. 2005 Nov;111(8):1596-607. doi: 10.1007/s00122-005-0091-3. Epub 2005 Nov 10. Theor Appl Genet. 2005. PMID: 16200416
Genome and evolution of the shade-requiring medicinal herb Panax ginseng.
Kim NH, Jayakodi M, Lee SC, Choi BS, Jang W, Lee J, Kim HH, Waminal NE, Lakshmanan M, van Nguyen B, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, Joh HJ, Lee H, Kim J, Kim IS, Kim K, Koduru L, Kang KB, Sung SH, Yu Y, Park DS, Choi D, Seo E, Kim S, Kim YC, Hyun DY, Park YI, Kim C, Lee TH, Kim HU, Soh MS, Lee Y, In JG, Kim HS, Kim YM, Yang DC, Wing RA, Lee DY, Paterson AH, Yang TJ. Kim NH, et al. Among authors: yu y. Plant Biotechnol J. 2018 Nov;16(11):1904-1917. doi: 10.1111/pbi.12926. Epub 2018 May 25. Plant Biotechnol J. 2018. PMID: 29604169 Free PMC article.
Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences.
Zhang J, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea JL, Lei Y, Wing RA. Zhang J, et al. Among authors: yu y. Bioinformatics. 2016 Oct 15;32(20):3058-3064. doi: 10.1093/bioinformatics/btw370. Epub 2016 Jun 17. Bioinformatics. 2016. PMID: 27318200 Free PMC article.
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.
Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang Y, Sun S, Jiao WB, Lv F, Du B, Luo M, Maldonado CE, Goicoechea JL, Xiong L, Wu C, Xing Y, Zhou DX, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou ZW, Hurtado BE, Danowitz A, Wing RA, Zhang Q. Zhang J, et al. Among authors: yu s, yu y. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):E5163-71. doi: 10.1073/pnas.1611012113. Epub 2016 Aug 17. Proc Natl Acad Sci U S A. 2016. PMID: 27535938 Free PMC article.
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA. Stein JC, et al. Among authors: yu y. Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22. Nat Genet. 2018. PMID: 29358651
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species.
Kim S, Park M, Yeom SI, Kim YM, Lee JM, Lee HA, Seo E, Choi J, Cheong K, Kim KT, Jung K, Lee GW, Oh SK, Bae C, Kim SB, Lee HY, Kim SY, Kim MS, Kang BC, Jo YD, Yang HB, Jeong HJ, Kang WH, Kwon JK, Shin C, Lim JY, Park JH, Huh JH, Kim JS, Kim BD, Cohen O, Paran I, Suh MC, Lee SB, Kim YK, Shin Y, Noh SJ, Park J, Seo YS, Kwon SY, Kim HA, Park JM, Kim HJ, Choi SB, Bosland PW, Reeves G, Jo SH, Lee BW, Cho HT, Choi HS, Lee MS, Yu Y, Do Choi Y, Park BS, van Deynze A, Ashrafi H, Hill T, Kim WT, Pai HS, Ahn HK, Yeam I, Giovannoni JJ, Rose JK, Sørensen I, Lee SJ, Kim RW, Choi IY, Choi BS, Lim JS, Lee YH, Choi D. Kim S, et al. Among authors: yu y. Nat Genet. 2014 Mar;46(3):270-8. doi: 10.1038/ng.2877. Epub 2014 Jan 19. Nat Genet. 2014. PMID: 24441736
Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species.
Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, Lee HJ, Park JY, Perumal S, Jayakodi M, Lee YS, Kim B, Copetti D, Kim S, Kim S, Lim KB, Kim YD, Lee J, Cho KS, Park BS, Wing RA, Yang TJ. Kim K, et al. Among authors: yu y. Sci Rep. 2015 Oct 28;5:15655. doi: 10.1038/srep15655. Sci Rep. 2015. PMID: 26506948 Free PMC article.
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