Zelezniak A - Search Results

1

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR. Tramontano M, et al. Among authors: zelezniak a. Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9. Epub 2018 Mar 19. Nat Microbiol. 2018. PMID: 29556107

2

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes.

Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR. Zelezniak A, et al. PLoS Comput Biol. 2010 Apr 1;6(4):e1000729. doi: 10.1371/journal.pcbi.1000729. PLoS Comput Biol. 2010. PMID: 20369014 Free PMC article.

3

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. Yamada T, et al. Among authors: zelezniak a. Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13. Mol Syst Biol. 2012. PMID: 22569339 Free PMC article.

4

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes.

Zelezniak A, Sheridan S, Patil KR. Zelezniak A, et al. PLoS Comput Biol. 2014 Apr 24;10(4):e1003572. doi: 10.1371/journal.pcbi.1003572. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24762675 Free PMC article.

5

Metabolic dependencies drive species co-occurrence in diverse microbial communities.

Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR. Zelezniak A, et al. Proc Natl Acad Sci U S A. 2015 May 19;112(20):6449-54. doi: 10.1073/pnas.1421834112. Epub 2015 May 4. Proc Natl Acad Sci U S A. 2015. PMID: 25941371 Free PMC article.

6

The metabolic background is a global player in Saccharomyces gene expression epistasis.

Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmanesfahar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, Lilley KS, Ralser M. Alam MT, et al. Among authors: zelezniak a. Nat Microbiol. 2016 Feb 1;1:15030. doi: 10.1038/nmicrobiol.2015.30. Nat Microbiol. 2016. PMID: 27572163 Free PMC article.

7

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes.

Zorrilla F, Buric F, Patil KR, Zelezniak A. Zorrilla F, et al. Among authors: zelezniak a. Nucleic Acids Res. 2021 Dec 2;49(21):e126. doi: 10.1093/nar/gkab815. Nucleic Acids Res. 2021. PMID: 34614189 Free PMC article.

8

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

Montagud A, Zelezniak A, Navarro E, de Córdoba PF, Urchueguía JF, Patil KR. Montagud A, et al. Among authors: zelezniak a. Biotechnol J. 2011 Mar;6(3):330-42. doi: 10.1002/biot.201000109. Epub 2011 Jan 11. Biotechnol J. 2011. PMID: 21226012

9

Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.

Gossmann TI, Shanmugasundram A, Börno S, Duvaux L, Lemaire C, Kuhl H, Klages S, Roberts LD, Schade S, Gostner JM, Hildebrand F, Vowinckel J, Bichet C, Mülleder M, Calvani E, Zelezniak A, Griffin JL, Bork P, Allaine D, Cohas A, Welch JJ, Timmermann B, Ralser M. Gossmann TI, et al. Among authors: zelezniak a. Curr Biol. 2019 May 20;29(10):1712-1720.e7. doi: 10.1016/j.cub.2019.04.020. Epub 2019 May 9. Curr Biol. 2019. PMID: 31080084 Free PMC article.

10

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism.

Li G, Hu Y, Jan Zrimec, Luo H, Wang H, Zelezniak A, Ji B, Nielsen J. Li G, et al. Among authors: zelezniak a. Nat Commun. 2021 Jan 8;12(1):190. doi: 10.1038/s41467-020-20338-2. Nat Commun. 2021. PMID: 33420025 Free PMC article.

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