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Path2Models: large-scale generation of computational models from biochemical pathway maps.
Büchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel M, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Le Novère N. Büchel F, et al. Among authors: zell a. BMC Syst Biol. 2013 Nov 1;7:116. doi: 10.1186/1752-0509-7-116. BMC Syst Biol. 2013. PMID: 24180668 Free PMC article.
The systems biology simulation core algorithm.
Keller R, Dörr A, Tabira A, Funahashi A, Ziller MJ, Adams R, Rodriguez N, Le Novère N, Hiroi N, Planatscher H, Zell A, Dräger A. Keller R, et al. Among authors: zell a. BMC Syst Biol. 2013 Jul 5;7:55. doi: 10.1186/1752-0509-7-55. BMC Syst Biol. 2013. PMID: 23826941 Free PMC article.
Qualitative translation of relations from BioPAX to SBML qual.
Büchel F, Wrzodek C, Mittag F, Dräger A, Eichner J, Rodriguez N, Le Novère N, Zell A. Büchel F, et al. Among authors: zell a. Bioinformatics. 2012 Oct 15;28(20):2648-53. doi: 10.1093/bioinformatics/bts508. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923304 Free PMC article.
JSBML: a flexible Java library for working with SBML.
Dräger A, Rodriguez N, Dumousseau M, Dörr A, Wrzodek C, Le Novère N, Zell A, Hucka M. Dräger A, et al. Among authors: zell a. Bioinformatics. 2011 Aug 1;27(15):2167-8. doi: 10.1093/bioinformatics/btr361. Epub 2011 Jun 22. Bioinformatics. 2011. PMID: 21697129 Free PMC article.
Pathway-based visualization of cross-platform microarray datasets.
Wrzodek C, Eichner J, Zell A. Wrzodek C, et al. Among authors: zell a. Bioinformatics. 2012 Dec 1;28(23):3021-6. doi: 10.1093/bioinformatics/bts583. Epub 2012 Oct 9. Bioinformatics. 2012. PMID: 23047564
DNAm), in a pathway-centred manner. RESULTS: We present a novel pathway-based visualization method that is especially suitable for the visualization of high-throughput datasets from multiple different microarray platforms that were used for the analysis of diverse g …
DNAm), in a pathway-centred manner. RESULTS: We present a novel pathway-based visualization method that is especially suitable …
111 results