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The Cancer Genome Atlas: Creating Lasting Value beyond Its Data.
Hutter C, Zenklusen JC. Hutter C, et al. Cell. 2018 Apr 5;173(2):283-285. doi: 10.1016/j.cell.2018.03.042. Cell. 2018. PMID: 29625045
High-resolution global genomic survey of 178 gliomas reveals novel regions of copy number alteration and allelic imbalances.
Kotliarov Y, Steed ME, Christopher N, Walling J, Su Q, Center A, Heiss J, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA. Kotliarov Y, et al. Cancer Res. 2006 Oct 1;66(19):9428-36. doi: 10.1158/0008-5472.CAN-06-1691. Cancer Res. 2006. PMID: 17018597 Free PMC article.
Epigenetic-mediated dysfunction of the bone morphogenetic protein pathway inhibits differentiation of glioblastoma-initiating cells.
Lee J, Son MJ, Woolard K, Donin NM, Li A, Cheng CH, Kotliarova S, Kotliarov Y, Walling J, Ahn S, Kim M, Totonchy M, Cusack T, Ene C, Ma H, Su Q, Zenklusen JC, Zhang W, Maric D, Fine HA. Lee J, et al. Cancer Cell. 2008 Jan;13(1):69-80. doi: 10.1016/j.ccr.2007.12.005. Cancer Cell. 2008. PMID: 18167341 Free PMC article.
Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas.
Li A, Walling J, Kotliarov Y, Center A, Steed ME, Ahn SJ, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA. Li A, et al. Mol Cancer Res. 2008 Jan;6(1):21-30. doi: 10.1158/1541-7786.MCR-07-0280. Epub 2008 Jan 9. Mol Cancer Res. 2008. PMID: 18184972
Correlation analysis between single-nucleotide polymorphism and expression arrays in gliomas identifies potentially relevant target genes.
Kotliarov Y, Kotliarova S, Charong N, Li A, Walling J, Aquilanti E, Ahn S, Steed ME, Su Q, Center A, Zenklusen JC, Fine HA. Kotliarov Y, et al. Cancer Res. 2009 Feb 15;69(4):1596-603. doi: 10.1158/0008-5472.CAN-08-2496. Epub 2009 Feb 3. Cancer Res. 2009. PMID: 19190341 Free PMC article.
Rembrandt: helping personalized medicine become a reality through integrative translational research.
Madhavan S, Zenklusen JC, Kotliarov Y, Sahni H, Fine HA, Buetow K. Madhavan S, et al. Mol Cancer Res. 2009 Feb;7(2):157-67. doi: 10.1158/1541-7786.MCR-08-0435. Epub 2009 Feb 10. Mol Cancer Res. 2009. PMID: 19208739 Free PMC article.
Unsupervised analysis of transcriptomic profiles reveals six glioma subtypes.
Li A, Walling J, Ahn S, Kotliarov Y, Su Q, Quezado M, Oberholtzer JC, Park J, Zenklusen JC, Fine HA. Li A, et al. Cancer Res. 2009 Mar 1;69(5):2091-9. doi: 10.1158/0008-5472.CAN-08-2100. Epub 2009 Feb 24. Cancer Res. 2009. PMID: 19244127 Free PMC article.
A Practical Guide to The Cancer Genome Atlas (TCGA).
Wang Z, Jensen MA, Zenklusen JC. Wang Z, et al. Methods Mol Biol. 2016;1418:111-41. doi: 10.1007/978-1-4939-3578-9_6. Methods Mol Biol. 2016. PMID: 27008012
Facilitating a culture of responsible and effective sharing of cancer genome data.
Siu LL, Lawler M, Haussler D, Knoppers BM, Lewin J, Vis DJ, Liao RG, Andre F, Banks I, Barrett JC, Caldas C, Camargo AA, Fitzgerald RC, Mao M, Mattison JE, Pao W, Sellers WR, Sullivan P, Teh BT, Ward RL, ZenKlusen JC, Sawyers CL, Voest EE. Siu LL, et al. Nat Med. 2016 May 5;22(5):464-71. doi: 10.1038/nm.4089. Nat Med. 2016. PMID: 27149219 Free PMC article.
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