Zhang B - Search Results

1

Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation.

Chourey K, Thompson MR, Shah M, Zhang B, Verberkmoes NC, Thompson DK, Hettich RL. Chourey K, et al. Among authors: zhang b. J Proteome Res. 2009 Jan;8(1):59-71. doi: 10.1021/pr800776d. J Proteome Res. 2009. PMID: 19118451

2

Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.

Abraham PE, Wang X, Ranjan P, Nookaew I, Zhang B, Tuskan GA, Hettich RL. Abraham PE, et al. Among authors: zhang b. J Proteome Res. 2015 Dec 4;14(12):5318-26. doi: 10.1021/acs.jproteome.5b00823. Epub 2015 Oct 30. J Proteome Res. 2015. PMID: 26483142

3

Integrative Omics Analysis Reveals Post-Transcriptionally Enhanced Protective Host Response in Colorectal Cancers with Microsatellite Instability.

Liu Q, Zhang B. Liu Q, et al. Among authors: zhang b. J Proteome Res. 2016 Mar 4;15(3):766-76. doi: 10.1021/acs.jproteome.5b00847. Epub 2015 Dec 29. J Proteome Res. 2016. PMID: 26680540 Free PMC article.

4

Association analysis for large-scale gene set data.

Kirov SA, Zhang B, Snoddy JR. Kirov SA, et al. Among authors: zhang b. Methods Mol Biol. 2007;408:19-33. doi: 10.1007/978-1-59745-547-3_2. Methods Mol Biol. 2007. PMID: 18314575

5

From pull-down data to protein interaction networks and complexes with biological relevance.

Zhang B, Park BH, Karpinets T, Samatova NF. Zhang B, et al. Bioinformatics. 2008 Apr 1;24(7):979-86. doi: 10.1093/bioinformatics/btn036. Epub 2008 Feb 26. Bioinformatics. 2008. PMID: 18304937

6

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics.

Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, Pelletier DA, Harwood CS, Hettich RL. Pan C, et al. Among authors: zhang b. Mol Cell Proteomics. 2008 May;7(5):938-48. doi: 10.1074/mcp.M700147-MCP200. Epub 2007 Dec 20. Mol Cell Proteomics. 2008. PMID: 18156135 Free article.

7

WebGestalt: an integrated system for exploring gene sets in various biological contexts.

Zhang B, Kirov S, Snoddy J. Zhang B, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W741-8. doi: 10.1093/nar/gki475. Nucleic Acids Res. 2005. PMID: 15980575 Free PMC article.

8

Detecting differential and correlated protein expression in label-free shotgun proteomics.

Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, Samatova NF. Zhang B, et al. J Proteome Res. 2006 Nov;5(11):2909-18. doi: 10.1021/pr0600273. J Proteome Res. 2006. PMID: 17081042

9

Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction.

Wang J, Ma Z, Carr SA, Mertins P, Zhang H, Zhang Z, Chan DW, Ellis MJ, Townsend RR, Smith RD, McDermott JE, Chen X, Paulovich AG, Boja ES, Mesri M, Kinsinger CR, Rodriguez H, Rodland KD, Liebler DC, Zhang B. Wang J, et al. Among authors: zhang b, zhang z, zhang h. Mol Cell Proteomics. 2017 Jan;16(1):121-134. doi: 10.1074/mcp.M116.060301. Epub 2016 Nov 11. Mol Cell Proteomics. 2017. PMID: 27836980 Free PMC article.

10

Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.

Wang X, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2014 Jun 6;13(6):2715-23. doi: 10.1021/pr500194t. Epub 2014 May 12. J Proteome Res. 2014. PMID: 24792918 Free PMC article. Review.

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