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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R. Desiere F, et al. Among authors: zhang h. Genome Biol. 2005;6(1):R9. doi: 10.1186/gb-2004-6-1-r9. Epub 2004 Dec 10. Genome Biol. 2005. PMID: 15642101 Free PMC article.
High throughput proteome screening for biomarker detection.
Pan S, Zhang H, Rush J, Eng J, Zhang N, Patterson D, Comb MJ, Aebersold R. Pan S, et al. Among authors: zhang n, zhang h. Mol Cell Proteomics. 2005 Feb;4(2):182-90. doi: 10.1074/mcp.M400161-MCP200. Epub 2005 Jan 5. Mol Cell Proteomics. 2005. PMID: 15637048 Free article.
Human Plasma PeptideAtlas.
Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R. Deutsch EW, et al. Among authors: zhang h. Proteomics. 2005 Aug;5(13):3497-500. doi: 10.1002/pmic.200500160. Proteomics. 2005. PMID: 16052627
UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.
Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R. Zhang H, et al. Among authors: zhang n, zhang j. Genome Biol. 2006;7(8):R73. doi: 10.1186/gb-2006-7-8-R73. Epub 2006 Aug 10. Genome Biol. 2006. PMID: 16901351 Free PMC article.
Mass spectrometric detection of tissue proteins in plasma.
Zhang H, Liu AY, Loriaux P, Wollscheid B, Zhou Y, Watts JD, Aebersold R. Zhang H, et al. Mol Cell Proteomics. 2007 Jan;6(1):64-71. doi: 10.1074/mcp.M600160-MCP200. Epub 2006 Oct 9. Mol Cell Proteomics. 2007. PMID: 17030953 Free article.
Isolation of N-linked glycopeptides from plasma.
Zhou Y, Aebersold R, Zhang H. Zhou Y, et al. Among authors: zhang h. Anal Chem. 2007 Aug 1;79(15):5826-37. doi: 10.1021/ac0623181. Epub 2007 Jun 26. Anal Chem. 2007. PMID: 17591751
Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.
Liu Y, Chen J, Sethi A, Li QK, Chen L, Collins B, Gillet LC, Wollscheid B, Zhang H, Aebersold R. Liu Y, et al. Among authors: zhang h. Mol Cell Proteomics. 2014 Jul;13(7):1753-68. doi: 10.1074/mcp.M114.038273. Epub 2014 Apr 16. Mol Cell Proteomics. 2014. PMID: 24741114 Free PMC article.
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