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100,894 results
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Mining tertiary structural motifs for assessment of designability.
Zhang J, Grigoryan G. Zhang J, et al. Methods Enzymol. 2013;523:21-40. doi: 10.1016/B978-0-12-394292-0.00002-3. Methods Enzymol. 2013. PMID: 23422424 Free PMC article.
Graphene Symmetry Amplified by Designed Peptide Self-Assembly.
Mustata GM, Kim YH, Zhang J, DeGrado WF, Grigoryan G, Wanunu M. Mustata GM, et al. Among authors: zhang j. Biophys J. 2016 Jun 7;110(11):2507-2516. doi: 10.1016/j.bpj.2016.04.037. Biophys J. 2016. PMID: 27276268 Free PMC article.
Tertiary structural propensities reveal fundamental sequence/structure relationships.
Zheng F, Zhang J, Grigoryan G. Zheng F, et al. Among authors: zhang j. Structure. 2015 May 5;23(5):961-971. doi: 10.1016/j.str.2015.03.015. Epub 2015 Apr 23. Structure. 2015. PMID: 25914055
Computational design of selective peptides to discriminate between similar PDZ domains in an oncogenic pathway.
Zheng F, Jewell H, Fitzpatrick J, Zhang J, Mierke DF, Grigoryan G. Zheng F, et al. Among authors: zhang j. J Mol Biol. 2015 Jan 30;427(2):491-510. doi: 10.1016/j.jmb.2014.10.014. Epub 2014 Oct 30. J Mol Biol. 2015. PMID: 25451599 Free PMC article.
Design and designability of protein-based assemblies.
Zhang J, Zheng F, Grigoryan G. Zhang J, et al. Curr Opin Struct Biol. 2014 Aug;27:79-86. doi: 10.1016/ Epub 2014 Jun 20. Curr Opin Struct Biol. 2014. PMID: 24952313 Review.
Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
Peterson LX, Kim H, Esquivel-Rodriguez J, Roy A, Han X, Shin WH, Zhang J, Terashi G, Lee M, Kihara D. Peterson LX, et al. Among authors: zhang j. Proteins. 2017 Mar;85(3):513-527. doi: 10.1002/prot.25165. Epub 2016 Oct 14. Proteins. 2017. PMID: 27654025 Free PMC article.
Prediction of Local Quality of Protein Structure Models Considering Spatial Neighbors in Graphical Models.
Shin WH, Kang X, Zhang J, Kihara D. Shin WH, et al. Among authors: zhang j. Sci Rep. 2017 Jan 11;7:40629. doi: 10.1038/srep40629. Sci Rep. 2017. PMID: 28074879 Free PMC article.
Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement.
Xu D, Zhang J, Roy A, Zhang Y. Xu D, et al. Among authors: zhang j, zhang y. Proteins. 2011;79 Suppl 10(Suppl 10):147-60. doi: 10.1002/prot.23111. Epub 2011 Aug 23. Proteins. 2011. PMID: 22069036 Free PMC article.
A novel side-chain orientation dependent potential derived from random-walk reference state for protein fold selection and structure prediction.
Zhang J, Zhang Y. Zhang J, et al. Among authors: zhang y. PLoS One. 2010 Oct 27;5(10):e15386. doi: 10.1371/journal.pone.0015386. PLoS One. 2010. PMID: 21060880 Free PMC article.
GPCRRD: G protein-coupled receptor spatial restraint database for 3D structure modeling and function annotation.
Zhang J, Zhang Y. Zhang J, et al. Among authors: zhang y. Bioinformatics. 2010 Dec 1;26(23):3004-5. doi: 10.1093/bioinformatics/btq563. Epub 2010 Oct 5. Bioinformatics. 2010. PMID: 20926423 Free PMC article.
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