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827 results
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An efficient network querying method based on conditional random fields.
Huang Q, Wu LY, Zhang XS. Huang Q, et al. Among authors: zhang xs. Bioinformatics. 2011 Nov 15;27(22):3173-8. doi: 10.1093/bioinformatics/btr524. Epub 2011 Sep 16. Bioinformatics. 2011. PMID: 21926127
Aligning multiple protein structures by deterministic annealing.
Zhou T, Chen L, Tang Y, Zhang X. Zhou T, et al. J Bioinform Comput Biol. 2005 Aug;3(4):837-60. doi: 10.1142/s0219720005001351. J Bioinform Comput Biol. 2005. PMID: 16078364
Unique optimal foldings of proteins on a triangular lattice.
Li Z, Zhang X, Chen L. Li Z, et al. Appl Bioinformatics. 2005;4(2):105-16. doi: 10.2165/00822942-200504020-00004. Appl Bioinformatics. 2005. PMID: 16128612
Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis.
Song W, Wang J, Yang Y, Jing N, Zhang X, Chen L, Wu J. Song W, et al. J Mol Cell Biol. 2012 Aug;4(4):197-206. doi: 10.1093/jmcb/mjs029. Epub 2012 Jun 1. J Mol Cell Biol. 2012. PMID: 22661322
iPcc: a novel feature extraction method for accurate disease class discovery and prediction.
Ren X, Wang Y, Zhang XS, Jin Q. Ren X, et al. Among authors: zhang xs. Nucleic Acids Res. 2013 Aug;41(14):e143. doi: 10.1093/nar/gkt343. Epub 2013 Jun 12. Nucleic Acids Res. 2013. PMID: 23761440 Free PMC article.
GOMA: functional enrichment analysis tool based on GO modules.
Huang Q, Wu LY, Wang Y, Zhang XS. Huang Q, et al. Among authors: zhang xs. Chin J Cancer. 2013 Apr;32(4):195-204. doi: 10.5732/cjc.012.10151. Epub 2012 Dec 7. Chin J Cancer. 2013. PMID: 23237213 Free PMC article.
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation.
Ren X, Wang YC, Wang Y, Zhang XS, Deng NY. Ren X, et al. Among authors: zhang xs. BMC Bioinformatics. 2011 Oct 24;12:409. doi: 10.1186/1471-2105-12-409. BMC Bioinformatics. 2011. PMID: 22024143 Free PMC article.
Prediction of protein-RNA binding sites by a random forest method with combined features.
Liu ZP, Wu LY, Wang Y, Zhang XS, Chen L. Liu ZP, et al. Among authors: zhang xs. Bioinformatics. 2010 Jul 1;26(13):1616-22. doi: 10.1093/bioinformatics/btq253. Epub 2010 May 18. Bioinformatics. 2010. PMID: 20483814
Alignment of molecular networks by integer quadratic programming.
Zhenping L, Zhang S, Wang Y, Zhang XS, Chen L. Zhenping L, et al. Among authors: zhang s, zhang xs. Bioinformatics. 2007 Jul 1;23(13):1631-9. doi: 10.1093/bioinformatics/btm156. Epub 2007 Apr 27. Bioinformatics. 2007. PMID: 17468121
Discovering functions and revealing mechanisms at molecular level from biological networks.
Zhang S, Jin G, Zhang XS, Chen L. Zhang S, et al. Among authors: zhang xs. Proteomics. 2007 Aug;7(16):2856-69. doi: 10.1002/pmic.200700095. Proteomics. 2007. PMID: 17703505 Review.
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