Zhang Y - Search Results

1

Calculating sample size estimates for RNA sequencing data.

Hart SN, Therneau TM, Zhang Y, Poland GA, Kocher JP. Hart SN, et al. Among authors: zhang y. J Comput Biol. 2013 Dec;20(12):970-8. doi: 10.1089/cmb.2012.0283. Epub 2013 Aug 20. J Comput Biol. 2013. PMID: 23961961 Free PMC article.

2

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Leonard B, Hart SN, Burns MB, Carpenter MA, Temiz NA, Rathore A, Vogel RI, Nikas JB, Law EK, Brown WL, Li Y, Zhang Y, Maurer MJ, Oberg AL, Cunningham JM, Shridhar V, Bell DA, April C, Bentley D, Bibikova M, Cheetham RK, Fan JB, Grocock R, Humphray S, Kingsbury Z, Peden J, Chien J, Swisher EM, Hartmann LC, Kalli KR, Goode EL, Sicotte H, Kaufmann SH, Harris RS. Leonard B, et al. Among authors: zhang y. Cancer Res. 2013 Dec 15;73(24):7222-31. doi: 10.1158/0008-5472.CAN-13-1753. Epub 2013 Oct 23. Cancer Res. 2013. PMID: 24154874 Free PMC article.

3

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.

Sun Z, Asmann YW, Nair A, Zhang Y, Wang L, Kalari KR, Bhagwate AV, Baker TR, Carr JM, Kocher JP, Perez EA, Thompson EA. Sun Z, et al. Among authors: zhang y. PLoS One. 2013 Aug 19;8(8):e71745. doi: 10.1371/journal.pone.0071745. eCollection 2013. PLoS One. 2013. PMID: 23977132 Free PMC article.

4

Exploring the effect of library preparation on RNA sequencing experiments.

Wang L, Felts SJ, Van Keulen VP, Pease LR, Zhang Y. Wang L, et al. Among authors: zhang y. Genomics. 2019 Dec;111(6):1752-1759. doi: 10.1016/j.ygeno.2018.11.030. Epub 2018 Dec 6. Genomics. 2019. PMID: 30529531 Free PMC article.

5

Detection of 1α,25-dihydroxyvitamin D-regulated miRNAs in zebrafish by whole transcriptome sequencing.

Craig TA, Zhang Y, Magis AT, Funk CC, Price ND, Ekker SC, Kumar R. Craig TA, et al. Among authors: zhang y. Zebrafish. 2014 Jun;11(3):207-18. doi: 10.1089/zeb.2013.0899. Epub 2014 Mar 20. Zebrafish. 2014. PMID: 24650217 Free PMC article.

6

Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish.

Craig TA, Zhang Y, McNulty MS, Middha S, Ketha H, Singh RJ, Magis AT, Funk C, Price ND, Ekker SC, Kumar R. Craig TA, et al. Among authors: zhang y. Mol Endocrinol. 2012 Sep;26(9):1630-42. doi: 10.1210/me.2012-1113. Epub 2012 Jun 25. Mol Endocrinol. 2012. PMID: 22734042 Free PMC article.

7

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP. Asmann YW, et al. Among authors: zhang y. Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15. Bioinformatics. 2012. PMID: 22088845 Free PMC article.

8

Integrative Genome-Wide Analysis of Long Noncoding RNAs in Diverse Immune Cell Types of Melanoma Patients.

Wang L, Felts SJ, Van Keulen VP, Scheid AD, Block MS, Markovic SN, Pease LR, Zhang Y. Wang L, et al. Among authors: zhang y. Cancer Res. 2018 Aug 1;78(15):4411-4423. doi: 10.1158/0008-5472.CAN-18-0529. Epub 2018 Jun 12. Cancer Res. 2018. PMID: 29895674 Free PMC article.

9

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y, Li X, Beutler AS, Klee E, Asmann YW, Thompson EA, Kocher JP. Sun Z, et al. Among authors: zhang y. Bioinformatics. 2012 Aug 15;28(16):2180-1. doi: 10.1093/bioinformatics/bts337. Epub 2012 Jun 10. Bioinformatics. 2012. PMID: 22689387 Free PMC article.

10

Gene expression patterns in CD4+ peripheral blood cells in healthy subjects and stage IV melanoma patients.

Felts SJ, Van Keulen VP, Scheid AD, Allen KS, Bradshaw RK, Jen J, Peikert T, Middha S, Zhang Y, Block MS, Markovic SN, Pease LR. Felts SJ, et al. Among authors: zhang y. Cancer Immunol Immunother. 2015 Nov;64(11):1437-47. doi: 10.1007/s00262-015-1745-x. Epub 2015 Aug 6. Cancer Immunol Immunother. 2015. PMID: 26245876 Free PMC article.

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