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59,406 results
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Altschul SF, et al. Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389. Nucleic Acids Res. 1997. PMID: 9254694 Free PMC article. Review.
Web-based visualization tools for bacterial genome alignments.
Florea L, Riemer C, Schwartz S, Zhang Z, Stojanovic N, Miller W, McClelland M. Florea L, et al. Nucleic Acids Res. 2000 Sep 15;28(18):3486-96. doi: 10.1093/nar/28.18.3486. Nucleic Acids Res. 2000. PMID: 10982867 Free PMC article.
Isolation and characterization of a gene encoding human Kruppel-like factor 5 (IKLF): binding to the CAAT/GT box of the mouse lactoferrin gene promoter.
Shi H, Zhang Z, Wang X, Liu S, Teng CT. Shi H, et al. Nucleic Acids Res. 1999 Dec 15;27(24):4807-15. doi: 10.1093/nar/27.24.4807. Nucleic Acids Res. 1999. PMID: 10572182 Free PMC article.
Protein sequence similarity searches using patterns as seeds.
Zhang Z, Schäffer AA, Miller W, Madden TL, Lipman DJ, Koonin EV, Altschul SF. Zhang Z, et al. Nucleic Acids Res. 1998 Sep 1;26(17):3986-90. doi: 10.1093/nar/26.17.3986. Nucleic Acids Res. 1998. PMID: 9705509 Free PMC article.
Comparison of DNA sequences with protein sequences.
Pearson WR, Wood T, Zhang Z, Miller W. Pearson WR, et al. Genomics. 1997 Nov 15;46(1):24-36. doi: 10.1006/geno.1997.4995. Genomics. 1997. PMID: 9403055
Aligning a DNA sequence with a protein sequence.
Zhang Z, Pearson WR, Miller W. Zhang Z, et al. J Comput Biol. 1997 Fall;4(3):339-49. doi: 10.1089/cmb.1997.4.339. J Comput Biol. 1997. PMID: 9278064
Winnowing sequences from a database search.
Berman P, Zhang Z, Wolf YI, Koonin EV, Miller W. Berman P, et al. J Comput Biol. 2000 Feb-Apr;7(1-2):293-302. doi: 10.1089/10665270050081531. J Comput Biol. 2000. PMID: 10890403
Post-processing long pairwise alignments.
Zhang Z, Berman P, Wiehe T, Miller W. Zhang Z, et al. Bioinformatics. 1999 Dec;15(12):1012-9. doi: 10.1093/bioinformatics/15.12.1012. Bioinformatics. 1999. PMID: 10745991
A greedy algorithm for aligning DNA sequences.
Zhang Z, Schwartz S, Wagner L, Miller W. Zhang Z, et al. J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478. J Comput Biol. 2000. PMID: 10890397
Alignments without low-scoring regions.
Zhang Z, Berman P, Miller W. Zhang Z, et al. J Comput Biol. 1998 Summer;5(2):197-210. doi: 10.1089/cmb.1998.5.197. J Comput Biol. 1998. PMID: 9672828
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