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PipMaker--a web server for aligning two genomic DNA sequences.
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. Schwartz S, et al. Among authors: zhang z. Genome Res. 2000 Apr;10(4):577-86. doi: 10.1101/gr.10.4.577. Genome Res. 2000. PMID: 10779500 Free PMC article.
A greedy algorithm for aligning DNA sequences.
Zhang Z, Schwartz S, Wagner L, Miller W. Zhang Z, et al. J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478. J Comput Biol. 2000. PMID: 10890397
Human-mouse alignments with BLASTZ.
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Schwartz S, et al. Among authors: zhang z. Genome Res. 2003 Jan;13(1):103-7. doi: 10.1101/gr.809403. Genome Res. 2003. PMID: 12529312 Free PMC article.
Constructing aligned sequence blocks.
Miller W, Boguski M, Raghavachari B, Zhang Z, Hardison RC. Miller W, et al. Among authors: zhang z. J Comput Biol. 1994 Spring;1(1):51-64. doi: 10.1089/cmb.1994.1.51. J Comput Biol. 1994. PMID: 8790453
Chaining multiple-alignment blocks.
Zhang Z, Raghavachari B, Hardison RC, Miller W. Zhang Z, et al. J Comput Biol. 1994 Fall;1(3):217-26. doi: 10.1089/cmb.1994.1.217. J Comput Biol. 1994. PMID: 8790466
Progressive multiple alignment with constraints.
Myers G, Selznick S, Zhang Z, Miller W. Myers G, et al. Among authors: zhang z. J Comput Biol. 1996 Winter;3(4):563-72. doi: 10.1089/cmb.1996.3.563. J Comput Biol. 1996. PMID: 9018604
Alignments without low-scoring regions.
Zhang Z, Berman P, Miller W. Zhang Z, et al. J Comput Biol. 1998 Summer;5(2):197-210. doi: 10.1089/cmb.1998.5.197. J Comput Biol. 1998. PMID: 9672828
Post-processing long pairwise alignments.
Zhang Z, Berman P, Wiehe T, Miller W. Zhang Z, et al. Bioinformatics. 1999 Dec;15(12):1012-9. doi: 10.1093/bioinformatics/15.12.1012. Bioinformatics. 1999. PMID: 10745991
101,075 results
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