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Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment.
Borowsky J, Haruki K, Lau MC, Dias Costa A, Väyrynen JP, Ugai T, Arima K, da Silva A, Felt KD, Zhao M, Gurjao C, Twombly TS, Fujiyoshi K, Väyrynen SA, Hamada T, Mima K, Bullman S, Harrison TA, Phipps AI, Peters U, Ng K, Meyerhardt JA, Song M, Giovannucci EL, Wu K, Zhang X, Freeman GJ, Huttenhower C, Garrett WS, Chan AT, Leggett BA, Whitehall VLJ, Walker N, Brown I, Bettington M, Nishihara R, Fuchs CS, Lennerz JK, Giannakis M, Nowak JA, Ogino S. Borowsky J, et al. Among authors: zhao m. Clin Cancer Res. 2021 May 15;27(10):2816-2826. doi: 10.1158/1078-0432.CCR-20-4009. Epub 2021 Feb 25. Clin Cancer Res. 2021. PMID: 33632927 Free PMC article.
Metabolic Profiling of Formalin-Fixed Paraffin-Embedded Tissues Discriminates Normal Colon from Colorectal Cancer.
Arima K, Lau MC, Zhao M, Haruki K, Kosumi K, Mima K, Gu M, Väyrynen JP, Twombly TS, Baba Y, Fujiyoshi K, Kishikawa J, Guo C, Baba H, Richards WG, Chan AT, Nishihara R, Meyerhardt JA, Nowak JA, Giannakis M, Fuchs CS, Ogino S. Arima K, et al. Among authors: zhao m. Mol Cancer Res. 2020 Jun;18(6):883-890. doi: 10.1158/1541-7786.MCR-19-1091. Epub 2020 Mar 12. Mol Cancer Res. 2020. PMID: 32165453 Free PMC article.
Prognostic Significance of Immune Cell Populations Identified by Machine Learning in Colorectal Cancer Using Routine Hematoxylin and Eosin-Stained Sections.
Väyrynen JP, Lau MC, Haruki K, Väyrynen SA, Dias Costa A, Borowsky J, Zhao M, Fujiyoshi K, Arima K, Twombly TS, Kishikawa J, Gu S, Aminmozaffari S, Shi S, Baba Y, Akimoto N, Ugai T, Da Silva A, Song M, Wu K, Chan AT, Nishihara R, Fuchs CS, Meyerhardt JA, Giannakis M, Ogino S, Nowak JA. Väyrynen JP, et al. Among authors: zhao m. Clin Cancer Res. 2020 Aug 15;26(16):4326-4338. doi: 10.1158/1078-0432.CCR-20-0071. Epub 2020 May 21. Clin Cancer Res. 2020. PMID: 32439699 Free PMC article.
Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancer.
Fujiyoshi K, Väyrynen JP, Borowsky J, Papke DJ Jr, Arima K, Haruki K, Kishikawa J, Akimoto N, Ugai T, Lau MC, Gu S, Shi S, Zhao M, Da Silva AFL, Twombly TS, Nan H, Meyerhardt JA, Song M, Zhang X, Wu K, Chan AT, Fuchs CS, Lennerz JK, Giannakis M, Nowak JA, Ogino S. Fujiyoshi K, et al. Among authors: zhao m. EBioMedicine. 2020 Jul;57:102860. doi: 10.1016/j.ebiom.2020.102860. Epub 2020 Jul 8. EBioMedicine. 2020. PMID: 32652320 Free PMC article.
Smoking Status at Diagnosis and Colorectal Cancer Prognosis According to Tumor Lymphocytic Reaction.
Fujiyoshi K, Chen Y, Haruki K, Ugai T, Kishikawa J, Hamada T, Liu L, Arima K, Borowsky J, Väyrynen JP, Zhao M, Lau MC, Gu S, Shi S, Akimoto N, Twombly TS, Drew DA, Song M, Chan AT, Giovannucci EL, Meyerhardt JA, Fuchs CS, Nishihara R, Lennerz JK, Giannakis M, Nowak JA, Zhang X, Wu K, Ogino S. Fujiyoshi K, et al. Among authors: zhao m. JNCI Cancer Spectr. 2020 May 14;4(5):pkaa040. doi: 10.1093/jncics/pkaa040. eCollection 2020 Aug. JNCI Cancer Spectr. 2020. PMID: 32923934 Free PMC article.
The Prognostic Role of Macrophage Polarization in the Colorectal Cancer Microenvironment.
Väyrynen JP, Haruki K, Lau MC, Väyrynen SA, Zhong R, Dias Costa A, Borowsky J, Zhao M, Fujiyoshi K, Arima K, Twombly TS, Kishikawa J, Gu S, Aminmozaffari S, Shi S, Baba Y, Akimoto N, Ugai T, Da Silva A, Guerriero JL, Song M, Wu K, Chan AT, Nishihara R, Fuchs CS, Meyerhardt JA, Giannakis M, Ogino S, Nowak JA. Väyrynen JP, et al. Among authors: zhao m. Cancer Immunol Res. 2021 Jan;9(1):8-19. doi: 10.1158/2326-6066.CIR-20-0527. Epub 2020 Oct 6. Cancer Immunol Res. 2021. PMID: 33023967 Free PMC article.
Coffee Intake and Colorectal Cancer Incidence According to T-Cell Response.
Ugai T, Haruki K, Väyrynen JP, Zhong R, Borowsky J, Fujiyoshi K, Lau MC, Zhao M, Akimoto N, Chang TW, Kishikawa J, Arima K, Shi SS, Gu S, Fuchs CS, Giovannucci EL, Giannakis M, Zhang X, Song M, Meyerhardt JA, Wang M, Nowak JA, Ogino S. Ugai T, et al. Among authors: zhao m. JNCI Cancer Spectr. 2020 Sep 7;4(6):pkaa068. doi: 10.1093/jncics/pkaa068. eCollection 2020 Dec. JNCI Cancer Spectr. 2020. PMID: 33409450 Free PMC article.
Tumor Long Interspersed Nucleotide Element-1 (LINE-1) Hypomethylation in Relation to Age of Colorectal Cancer Diagnosis and Prognosis.
Akimoto N, Zhao M, Ugai T, Zhong R, Lau MC, Fujiyoshi K, Kishikawa J, Haruki K, Arima K, Twombly TS, Zhang X, Giovannucci EL, Wu K, Song M, Chan AT, Cao Y, Meyerhardt JA, Ng K, Giannakis M, Väyrynen JP, Nowak JA, Ogino S. Akimoto N, et al. Among authors: zhao m. Cancers (Basel). 2021 Apr 22;13(9):2016. doi: 10.3390/cancers13092016. Cancers (Basel). 2021. PMID: 33922024 Free PMC article.
Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment.
Väyrynen JP, Haruki K, Väyrynen SA, Lau MC, Dias Costa A, Borowsky J, Zhao M, Ugai T, Kishikawa J, Akimoto N, Zhong R, Shi S, Chang TW, Fujiyoshi K, Arima K, Twombly TS, Da Silva A, Song M, Wu K, Zhang X, Chan AT, Nishihara R, Fuchs CS, Meyerhardt JA, Giannakis M, Ogino S, Nowak JA. Väyrynen JP, et al. Among authors: zhao m. J Immunother Cancer. 2021 Apr;9(4):e002297. doi: 10.1136/jitc-2020-002297. J Immunother Cancer. 2021. PMID: 33931472 Free PMC article.
Smoking and Incidence of Colorectal Cancer Subclassified by Tumor-Associated Macrophage Infiltrates.
Ugai T, Väyrynen JP, Haruki K, Akimoto N, Lau MC, Zhong R, Kishikawa J, Väyrynen SA, Zhao M, Fujiyoshi K, Dias Costa A, Borowsky J, Arima K, Guerriero JL, Fuchs CS, Zhang X, Song M, Wang M, Giannakis M, Meyerhardt JA, Nowak JA, Ogino S. Ugai T, et al. Among authors: zhao m. J Natl Cancer Inst. 2022 Jan 11;114(1):68-77. doi: 10.1093/jnci/djab142. J Natl Cancer Inst. 2022. PMID: 34264325 Free PMC article.
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