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Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells.
Zhao S, Fung-Leung WP, Bittner A, Ngo K, Liu X. Zhao S, et al. PLoS One. 2014 Jan 16;9(1):e78644. doi: 10.1371/journal.pone.0078644. eCollection 2014. PLoS One. 2014. PMID: 24454679 Free PMC article.
Computational identification and validation of alternative splicing in ZSF1 rat RNA-seq data, a preclinical model for type 2 diabetic nephropathy.
Zhang C, Dower K, Zhang B, Martinez RV, Lin LL, Zhao S. Zhang C, et al. Sci Rep. 2018 May 16;8(1):7624. doi: 10.1038/s41598-018-26035-x. Sci Rep. 2018. PMID: 29769602 Free PMC article.
QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization.
He W, Zhao S, Zhang C, Vincent MS, Zhang B. He W, et al. Methods Mol Biol. 2018;1751:57-70. doi: 10.1007/978-1-4939-7710-9_4. Methods Mol Biol. 2018. PMID: 29508289
The original QuickRNASeq publication (Zhao et al., BMC Genomics, 17:39-53, 2016) provided details of background, software selection, and implementation. Here, we outline the steps required to implement QuickRNASeq in user's own environment, as well as demonstrate so …
The original QuickRNASeq publication (Zhao et al., BMC Genomics, 17:39-53, 2016) provided details of background, software selection, …
QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing.
Zhao S, Gordon W, Du S, Zhang C, He W, Xi L, Mathur S, Agostino M, Paradis T, von Schack D, Vincent M, Zhang B. Zhao S, et al. BMC Bioinformatics. 2017 Mar 20;18(1):180. doi: 10.1186/s12859-017-1601-4. BMC Bioinformatics. 2017. PMID: 28320324 Free PMC article.
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