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The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.
Wu L, McCluskey K, Desmeth P, Liu S, Hideaki S, Yin Y, Moriya O, Itoh T, Kim CY, Lee JS, Zhou Y, Kawasaki H, Hazbón MH, Robert V, Boekhout T, Lima N, Evtushenko L, Boundy-Mills K, Bunk B, Moore ERB, Eurwilaichitr L, Ingsriswang S, Shah H, Yao S, Jin T, Huang J, Shi W, Sun Q, Fan G, Li W, Li X, Kurtböke I, Ma J. Wu L, et al. Among authors: zhou y. Gigascience. 2018 May 1;7(5):giy026. doi: 10.1093/gigascience/giy026. Gigascience. 2018. PMID: 29718202 Free PMC article.
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide.
Wu L, Sun Q, Desmeth P, Sugawara H, Xu Z, McCluskey K, Smith D, Alexander V, Lima N, Ohkuma M, Robert V, Zhou Y, Li J, Fan G, Ingsriswang S, Ozerskaya S, Ma J. Wu L, et al. Among authors: zhou y. Nucleic Acids Res. 2017 Jan 4;45(D1):D611-D618. doi: 10.1093/nar/gkw903. Epub 2016 Oct 7. Nucleic Acids Res. 2017. PMID: 28053166 Free PMC article.
The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria.
Liu C, Zhou N, Du MX, Sun YT, Wang K, Wang YJ, Li DH, Yu HY, Song Y, Bai BB, Xin Y, Wu L, Jiang CY, Feng J, Xiang H, Zhou Y, Ma J, Wang J, Liu HW, Liu SJ. Liu C, et al. Among authors: zhou y, zhou n. Nat Commun. 2020 Jan 7;11(1):79. doi: 10.1038/s41467-019-13836-5. Nat Commun. 2020. PMID: 31911589 Free PMC article.
gcType: a high-quality type strain genome database for microbial phylogenetic and functional research.
Shi W, Sun Q, Fan G, Hideaki S, Moriya O, Itoh T, Zhou Y, Cai M, Kim SG, Lee JS, Sedlacek I, Arahal DR, Lucena T, Kawasaki H, Evtushenko L, Weir BS, Alexander S, Dénes D, Tanasupawat S, Eurwilaichitr L, Ingsriswang S, Gomez-Gil B, Hazbón MH, Riojas MA, Suwannachart C, Yao S, Vandamme P, Peng F, Chen Z, Liu D, Sun X, Zhang X, Zhou Y, Meng Z, Wu L, Ma J. Shi W, et al. Among authors: zhou y. Nucleic Acids Res. 2021 Jan 8;49(D1):D694-D705. doi: 10.1093/nar/gkaa957. Nucleic Acids Res. 2021. PMID: 33119759 Free PMC article.
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank.
Liu C, Du MX, Abuduaini R, Yu HY, Li DH, Wang YJ, Zhou N, Jiang MZ, Niu PX, Han SS, Chen HH, Shi WY, Wu L, Xin YH, Ma J, Zhou Y, Jiang CY, Liu HW, Liu SJ. Liu C, et al. Among authors: zhou y, zhou n. Microbiome. 2021 May 21;9(1):119. doi: 10.1186/s40168-021-01064-3. Microbiome. 2021. PMID: 34020714 Free PMC article.
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Among authors: zhou y. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
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