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2020 7
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Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini).
Zhang D, Jin J, Niu Z, Zhang F, Orr MC, Zhou Q, Luo A, Zhu C. Zhang D, et al. Genome Biol Evol. 2022 Feb 4;14(2):evac014. doi: 10.1093/gbe/evac014. Genome Biol Evol. 2022. PMID: 35150256 Free PMC article.
Anthidiini, a large bee tribe characterized by light-colored maculations, represents nearly 1,000 pollinator species, but no genomes are yet available for this tribe. Here, we report a chromosome-level genome assembly of Anthidium xuezhongi collected from the Tibetan Plate …
Anthidiini, a large bee tribe characterized by light-colored maculations, represents nearly 1,000 pollinator species, but no genomes are yet …
A New High-Quality Draft Genome Assembly of the Chinese Cordyceps Ophiocordyceps sinensis.
Shu R, Zhang J, Meng Q, Zhang H, Zhou G, Li M, Wu P, Zhao Y, Chen C, Qin Q. Shu R, et al. Genome Biol Evol. 2020 Jul 1;12(7):1074-1079. doi: 10.1093/gbe/evaa112. Genome Biol Evol. 2020. PMID: 32579174 Free PMC article.
Here, taking advantage of rapid advances in single-molecule sequencing, we assembled a highly contiguous genome assembly of O. sinensis. The assembly of 23 contigs was 110.8 Mb with a N50 length of 18.2 Mb. ...Moreover, 63 secondary metabolite gene clusters were identified …
Here, taking advantage of rapid advances in single-molecule sequencing, we assembled a highly contiguous genome assembly of O. sinens …
Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication.
Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS, Zhou Y. Kou Y, et al. Mol Biol Evol. 2020 Dec 16;37(12):3507-3524. doi: 10.1093/molbev/msaa185. Mol Biol Evol. 2020. PMID: 32681796 Free PMC article.
In addition to this short-read data set, we also inferred SVs from whole-genome assemblies and long-read data. Comparisons among data sets revealed different features of genome variability. For example, genome alignment identified a large (4.3 Mb) inversion i …
In addition to this short-read data set, we also inferred SVs from whole-genome assemblies and long-read data. Comparisons among data …
PRE-1 Revealed Previous Unknown Introgression Events in Eurasian Boars during the Middle Pleistocene.
Zhao P, Du H, Jiang L, Zheng X, Feng W, Diao C, Zhou L, Liu GE, Zhang H, Chamba Y, Zhang Q, Li B, Liu JF. Zhao P, et al. Genome Biol Evol. 2020 Oct 1;12(10):1751-1764. doi: 10.1093/gbe/evaa142. Genome Biol Evol. 2020. PMID: 33151306 Free PMC article.
Previous findings on these population introgressions were largely based on extensive genome-wide single-nucleotide polymorphism information, ignoring structural variants (SVs) as an important alternative resource of genetic variations. Here, we profiled the genome-w …
Previous findings on these population introgressions were largely based on extensive genome-wide single-nucleotide polymorphism infor …
De Novo Genome Assembly of Limpet Bathyacmaea lactea (Gastropoda: Pectinodontidae): The First Reference Genome of a Deep-Sea Gastropod Endemic to Cold Seeps.
Liu R, Wang K, Liu J, Xu W, Zhou Y, Zhu C, Wu B, Li Y, Wang W, He S, Feng C, Zhang H. Liu R, et al. Genome Biol Evol. 2020 Jun 1;12(6):905-910. doi: 10.1093/gbe/evaa100. Genome Biol Evol. 2020. PMID: 32467969 Free PMC article.
However, scarce genomic resources severely limit our knowledge about the origin and adaptation of life in this unique ecosystem. Here, we present a genome of a deep-sea limpet Bathyacmaea lactea, a common species associated with the dominant mussel beds in cold seeps. ...T …
However, scarce genomic resources severely limit our knowledge about the origin and adaptation of life in this unique ecosystem. Here, we pr …
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes).
Zhou QS, Luo A, Zhang F, Niu ZQ, Wu QT, Xiong M, Orr MC, Zhu CD. Zhou QS, et al. Genome Biol Evol. 2020 Jun 1;12(6):860-866. doi: 10.1093/gbe/evaa090. Genome Biol Evol. 2020. PMID: 32386319 Free PMC article.
To enable deeper study of its biology, we sequenced the whole genome of C. gigas using single-molecule real-time sequencing on the Pacific Bioscience Sequel platform. ...The bee phylogeny with this newly sequenced colletid genome is consistent with available results …
To enable deeper study of its biology, we sequenced the whole genome of C. gigas using single-molecule real-time sequencing on the Pa …
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae.
Dong W, Xu C, Wen J, Zhou S. Dong W, et al. BMC Evol Biol. 2020 Jul 31;20(1):96. doi: 10.1186/s12862-020-01661-0. BMC Evol Biol. 2020. PMID: 32736519 Free PMC article.
BACKGROUND: Chloroplast genome sequence data is very useful in studying/addressing the phylogeny of plants at various taxonomic ranks. ...CONCLUSIONS: Our direct counts of chloroplast genome evolution events provide raw data for correctly modeling the evolution of s …
BACKGROUND: Chloroplast genome sequence data is very useful in studying/addressing the phylogeny of plants at various taxonomic ranks …
Four myriapod relatives - but who are sisters? No end to debates on relationships among the four major myriapod subgroups.
Szucsich NU, Bartel D, Blanke A, Böhm A, Donath A, Fukui M, Grove S, Liu S, Macek O, Machida R, Misof B, Nakagaki Y, Podsiadlowski L, Sekiya K, Tomizuka S, Von Reumont BM, Waterhouse RM, Walzl M, Meng G, Zhou X, Pass G, Meusemann K. Szucsich NU, et al. BMC Evol Biol. 2020 Nov 4;20(1):144. doi: 10.1186/s12862-020-01699-0. BMC Evol Biol. 2020. PMID: 33148176 Free PMC article.
Our taxon sampling was complemented by published transcriptome and genome data resulting in a supermatrix covering 59 species. We compiled two data sets, the first with a full coverage of genes per species (292 single-copy protein-coding genes), the second with a less stri …
Our taxon sampling was complemented by published transcriptome and genome data resulting in a supermatrix covering 59 species. We com …
Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species.
Gonçalves C, Steenwyk JL, Rinker DC, Opulente DA, LaBella AL, Harrison MC, Wolters JF, Zhou X, Shen XX, Covo S, Groenewald M, Hittinger CT, Rokas A. Gonçalves C, et al. Mol Biol Evol. 2025 Oct 29;42(11):msaf285. doi: 10.1093/molbev/msaf285. Mol Biol Evol. 2025. PMID: 41178256 Free PMC article.
We identified 3 distantly related lineages-encompassing 12% of species-that had both the most streamlined sets of genes involved in genome stability (specifically DNA repair) and the highest evolutionary rates in the entire subphylum. ...These findings highlight how hyperm …
We identified 3 distantly related lineages-encompassing 12% of species-that had both the most streamlined sets of genes involved in genom …