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Single-chain compaction of long duplex DNA by cationic nanoparticles: modes of interaction and comparison with chromatin.
Zinchenko AA, Sakaue T, Araki S, Yoshikawa K, Baigl D. Zinchenko AA, et al. J Phys Chem B. 2007 Mar 22;111(11):3019-31. doi: 10.1021/jp067926z. Epub 2007 Feb 28. J Phys Chem B. 2007. PMID: 17388415
Interplay between folding/unfolding and helix/coil transitions in giant DNA.
Mikhailenko SV, Sergeyev VG, Zinchenko AA, Gallyamov MO, Yaminsky IV, Yoshikawa K. Mikhailenko SV, et al. Among authors: zinchenko aa. Biomacromolecules. 2000 Winter;1(4):597-603. doi: 10.1021/bm0055403. Biomacromolecules. 2000. PMID: 11710187
Secondary structure of DNA is recognized by slightly cross-linked cationic hydrogel.
Sergeyev VG, Novoskoltseva OA, Pyshkina OA, Zinchenko AA, Rogacheva VB, Zezin AB, Yoshikawa K, Kabanov VA. Sergeyev VG, et al. Among authors: zinchenko aa. J Am Chem Soc. 2002 Sep 25;124(38):11324-33. doi: 10.1021/ja020486e. J Am Chem Soc. 2002. PMID: 12236747
Controlling the intrachain segregation on a single DNA molecule.
Zinchenko AA, Sergeyev VG, Murata S, Yoshikawa K. Zinchenko AA, et al. J Am Chem Soc. 2003 Apr 16;125(15):4414-5. doi: 10.1021/ja028804x. J Am Chem Soc. 2003. PMID: 12683799
Ascorbic acid induces a marked conformational change in long duplex DNA.
Yoshikawa Y, Suzuki M, Chen N, Zinchenko AA, Murata S, Kanbe T, Nakai T, Oana H, Yoshikawa K. Yoshikawa Y, et al. Among authors: zinchenko aa. Eur J Biochem. 2003 Jul;270(14):3101-6. doi: 10.1046/j.1432-1033.2003.03699.x. Eur J Biochem. 2003. PMID: 12846844
DNA compaction by divalent cations: structural specificity revealed by the potentiality of designed quaternary diammonium salts.
Zinchenko AA, Sergeyev VG, Yamabe K, Murata S, Yoshikawa K. Zinchenko AA, et al. Chembiochem. 2004 Mar 5;5(3):360-8. doi: 10.1002/cbic.200300797. Chembiochem. 2004. PMID: 14997528
Stereoisomeric discrimination in DNA compaction.
Zinchenko AA, Sergeyev VG, Kabanov VA, Murata S, Yoshikawa K. Zinchenko AA, et al. Angew Chem Int Ed Engl. 2004 Apr 26;43(18):2378-81. doi: 10.1002/anie.200453774. Angew Chem Int Ed Engl. 2004. PMID: 15114566 No abstract available.
Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment.
Zinchenko AA, Yoshikawa K. Zinchenko AA, et al. Biophys J. 2005 Jun;88(6):4118-23. doi: 10.1529/biophysj.104.057323. Epub 2005 Mar 18. Biophys J. 2005. PMID: 15778438 Free PMC article.
How does DNA compaction favor chiral selectivity with cationic species? Higher selectivity with lower cationic charge.
Zinchenko AA, Chen N, Murata S, Yoshikawa K. Zinchenko AA, et al. Chembiochem. 2005 Aug;6(8):1419-22. doi: 10.1002/cbic.200500032. Chembiochem. 2005. PMID: 16003803
Specific formation of beads-on-a-chain structures on giant DNA using a designed polyamine derivative.
Chen N, Zinchenko AA, Murata S, Yoshikawa K. Chen N, et al. Among authors: zinchenko aa. J Am Chem Soc. 2005 Aug 10;127(31):10910-6. doi: 10.1021/ja042509q. J Am Chem Soc. 2005. PMID: 16076197
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