Zinzen RP - Search Results

1

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP.

Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. Bonn S, et al. Among authors: zinzen rp. Nat Protoc. 2012 Apr 26;7(5):978-94. doi: 10.1038/nprot.2012.049. Nat Protoc. 2012. PMID: 22538849

2

Putting chromatin in its place: the pioneer factor NeuroD1 modulates chromatin state to drive cell fate decisions.

Glahs A, Zinzen RP. Glahs A, et al. Among authors: zinzen rp. EMBO J. 2016 Jan 4;35(1):1-3. doi: 10.15252/embj.201593324. Epub 2015 Nov 13. EMBO J. 2016. PMID: 26567170 Free PMC article.

3

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. Bonn S, et al. Among authors: zinzen rp. Nat Genet. 2012 Jan 8;44(2):148-56. doi: 10.1038/ng.1064. Nat Genet. 2012. PMID: 22231485

4

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis.

Zinzen RP, Furlong EE. Zinzen RP, et al. Genome Biol. 2008;9(11):240. doi: 10.1186/gb-2008-9-11-240. Epub 2008 Nov 4. Genome Biol. 2008. PMID: 19012800 Free PMC article. Review.

5

A conserved role for Snail as a potentiator of active transcription.

Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. Rembold M, et al. Among authors: zinzen rp. Genes Dev. 2014 Jan 15;28(2):167-81. doi: 10.1101/gad.230953.113. Epub 2014 Jan 8. Genes Dev. 2014. PMID: 24402316 Free PMC article.

6

McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes.

Hafez D, Karabacak A, Krueger S, Hwang YC, Wang LS, Zinzen RP, Ohler U. Hafez D, et al. Among authors: zinzen rp. Genome Biol. 2017 Oct 26;18(1):199. doi: 10.1186/s13059-017-1316-x. Genome Biol. 2017. PMID: 29070071 Free PMC article.

7

Combinatorial binding predicts spatio-temporal cis-regulatory activity.

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Zinzen RP, et al. Nature. 2009 Nov 5;462(7269):65-70. doi: 10.1038/nature08531. Nature. 2009. PMID: 19890324

8

Computational models for neurogenic gene expression in the Drosophila embryo.

Zinzen RP, Senger K, Levine M, Papatsenko D. Zinzen RP, et al. Curr Biol. 2006 Jul 11;16(13):1358-65. doi: 10.1016/j.cub.2006.05.044. Epub 2006 Jun 6. Curr Biol. 2006. PMID: 16750631

9

Determinants of promoter and enhancer transcription directionality in metazoans.

Ibrahim MM, Karabacak A, Glahs A, Kolundzic E, Hirsekorn A, Carda A, Tursun B, Zinzen RP, Lacadie SA, Ohler U. Ibrahim MM, et al. Among authors: zinzen rp. Nat Commun. 2018 Oct 26;9(1):4472. doi: 10.1038/s41467-018-06962-z. Nat Commun. 2018. PMID: 30367057 Free PMC article.

10

Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis.

Menzel P, McCorkindale AL, Stefanov SR, Zinzen RP, Meyer IM. Menzel P, et al. Among authors: zinzen rp. RNA Biol. 2019 Jan;16(1):69-81. doi: 10.1080/15476286.2018.1558907. Epub 2019 Jan 20. RNA Biol. 2019. PMID: 30582411 Free PMC article.

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