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Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.
Wiśniewski JR, Nagaraj N, Zougman A, Gnad F, Mann M. Wiśniewski JR, et al. J Proteome Res. 2010 Jun 4;9(6):3280-9. doi: 10.1021/pr1002214. J Proteome Res. 2010. PMID: 20415495
SAX in a pipet tip format offered a convenient and rapid way to fractionate phosphopeptides and mapped more than 5000 sites in a single six fraction experiment. ...Gene Ontology annotation reveals that 23% of identified sites are located on plasma membrane pr …
SAX in a pipet tip format offered a convenient and rapid way to fractionate phosphopeptides and mapped more than 5000 sites in …
Beyond linker histones and high mobility group proteins: global profiling of perchloric acid soluble proteins.
Zougman A, Wiśniewski JR. Zougman A, et al. J Proteome Res. 2006 Apr;5(4):925-34. doi: 10.1021/pr050415p. J Proteome Res. 2006. PMID: 16602700
Extraction with HClO(4) provides an easy method for efficient enrichment of both histone H1 and HMG proteins from a variety of tissues. ...Here we describe a study aimed at global characterization of HClO(4) extractable proteins from breast cancer cell lines. We rep …
Extraction with HClO(4) provides an easy method for efficient enrichment of both histone H1 and HMG proteins from a variety of tissue …
Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene.
Zougman A, Mann M, Wisniewski JR. Zougman A, et al. Nucleic Acids Res. 2011 Sep 1;39(16):7103-13. doi: 10.1093/nar/gkr273. Epub 2011 May 17. Nucleic Acids Res. 2011. PMID: 21586586 Free PMC article.
Here, we report the mass spectrometric discovery and biochemical validation of the novel protein encoded by a gene overlapping rab34 oncogene. ...NARR only partially colocalizes with fibrillarin, the pre-ribosomal RNA-processing protein, positioning NARR in a separa …
Here, we report the mass spectrometric discovery and biochemical validation of the novel protein encoded by a gene overlapping rab34 …
Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.
Wiśniewski JR, Zougman A, Mann M. Wiśniewski JR, et al. J Proteome Res. 2009 Dec;8(12):5674-8. doi: 10.1021/pr900748n. J Proteome Res. 2009. PMID: 19848406
Analysis of a single mouse hippocampus enables identification of more than 1000 membrane proteins in a single LC-MS/MS run without protein or peptide prefractionation. To extend proteome coverage, we developed a simple anion exchange fractionation method in …
Analysis of a single mouse hippocampus enables identification of more than 1000 membrane proteins in a single LC-MS/MS run wit …
Mapping of lysine monomethylation of linker histones in human breast and its cancer.
Lu A, Zougman A, Pudełko M, Bebenek M, Ziółkowski P, Mann M, Wiśniewski JR. Lu A, et al. J Proteome Res. 2009 Sep;8(9):4207-15. doi: 10.1021/pr9000652. J Proteome Res. 2009. PMID: 19552482
To improve sequence coverage, tryptic peptides of H1 were separated by HPLC and the individual fractions were analyzed using a peptide on-chip implementation of nanoelectrospray (TriVersa), coupled to a linear ion trap-orbitrap hybrid instrument. ...
To improve sequence coverage, tryptic peptides of H1 were separated by HPLC and the individual fractions were analyzed using a peptid …
Universal sample preparation method for proteome analysis.
Wiśniewski JR, Zougman A, Nagaraj N, Mann M. Wiśniewski JR, et al. Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19. Nat Methods. 2009. PMID: 19377485
We describe a method, filter-aided sample preparation (FASP), which combines the advantages of in-gel and in-solution digestion for mass spectrometry-based proteomics. We completely solubilized the proteome in sodium dodecyl sulfate, which we then exchanged by urea on a
We describe a method, filter-aided sample preparation (FASP), which combines the advantages of in-gel and in-solution digestion for m …
Evidence for insertional RNA editing in humans.
Zougman A, Ziółkowski P, Mann M, Wiśniewski JR. Zougman A, et al. Curr Biol. 2008 Nov 25;18(22):1760-5. doi: 10.1016/j.cub.2008.09.059. Epub 2008 Nov 6. Curr Biol. 2008. PMID: 18993075
Here, we use such information to discover a previously unreported mechanism creating altered protein forms. Linker histones H1 and high-mobility group (HMG) proteins are abundant nuclear proteins that regulate gene expression through modulation of chromatin structure [5-8] …
Here, we use such information to discover a previously unreported mechanism creating altered protein forms. Linker histones H1 and hi …
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.
Wiśniewski JR, Zougman A, Krüger S, Ziółkowski P, Pudełko M, Bebenek M, Mann M. Wiśniewski JR, et al. Proteins. 2008 Nov 15;73(3):710-8. doi: 10.1002/prot.22104. Proteins. 2008. PMID: 18491381
Nuclear ubiquitous casein and cyclin-dependent kinases substrate (NUCKS) is a 27 kDa chromosomal protein of unknown function. ...Of the 243 amino acids, at least 36 can be modified with a total of 57 posttranslational modifications. Thus, NUCKS appears to have the h …
Nuclear ubiquitous casein and cyclin-dependent kinases substrate (NUCKS) is a 27 kDa chromosomal protein of unknown function. ...Of t …
Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function.
Wisniewski JR, Zougman A, Mann M. Wisniewski JR, et al. Nucleic Acids Res. 2008 Feb;36(2):570-7. doi: 10.1093/nar/gkm1057. Epub 2007 Dec 1. Nucleic Acids Res. 2008. PMID: 18056081 Free PMC article.
Whereas these modifications have been studied in detail, very little is known about a recently discovered chemical modification, the N(epsilon)-lysine formylation, in histones and other nuclear proteins. ...
Whereas these modifications have been studied in detail, very little is known about a recently discovered chemical modification, the …
Integrated analysis of the cerebrospinal fluid peptidome and proteome.
Zougman A, Pilch B, Podtelejnikov A, Kiehntopf M, Schnabel C, Kumar C, Mann M. Zougman A, et al. J Proteome Res. 2008 Jan;7(1):386-99. doi: 10.1021/pr070501k. Epub 2007 Dec 4. J Proteome Res. 2008. PMID: 18052119
Cerebrospinal fluid (CSF) is the only body fluid in direct contact with the brain and thus is a potential source of biomarkers. Furthermore, CSF serves as a medium of endocrine signaling and contains a multitude of regulatory peptides. A combined study …
Cerebrospinal fluid (CSF) is the only body fluid in direct contact with the brain and thus is a potential source of biomarkers. Furth …
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