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The Giardia lamblia actin gene and the phylogeny of eukaryotes.
Drouin G, Moniz de Sá M, Zuker M. Drouin G, et al. J Mol Evol. 1995 Dec;41(6):841-9. doi: 10.1007/BF00173163. J Mol Evol. 1995. PMID: 8587128
Prediction of RNA secondary structure by energy minimization.
Zuker M. Zuker M. Methods Mol Biol. 1994;25:267-94. doi: 10.1385/0-89603-276-0:267. Methods Mol Biol. 1994. PMID: 7516239 No abstract available.
On finding all suboptimal foldings of an RNA molecule.
Zuker M. Zuker M. Science. 1989 Apr 7;244(4900):48-52. doi: 10.1126/science.2468181. Science. 1989. PMID: 2468181 Review.
Predicting common foldings of homologous RNAs.
Le SY, Zuker M. Le SY, et al. J Biomol Struct Dyn. 1991 Apr;8(5):1027-44. doi: 10.1080/07391102.1991.10507863. J Biomol Struct Dyn. 1991. PMID: 1715169
A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison.
Zuker M, Jaeger JA, Turner DH. Zuker M, et al. Nucleic Acids Res. 1991 May 25;19(10):2707-14. doi: 10.1093/nar/19.10.2707. Nucleic Acids Res. 1991. PMID: 1710343 Free PMC article.
OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach.
Rouillard JM, Zuker M, Gulari E. Rouillard JM, et al. Nucleic Acids Res. 2003 Jun 15;31(12):3057-62. doi: 10.1093/nar/gkg426. Nucleic Acids Res. 2003. PMID: 12799432 Free PMC article.
Furthermore, OligoArray 2.0 can adjust the oligonucleotide length, according to user input, to fit a narrow T(m) range compatible with hybridization requirements. ...
Furthermore, OligoArray 2.0 can adjust the oligonucleotide length, according to user input, to fit a narrow T(m) range compatible wit …
UNAFold: software for nucleic acid folding and hybridization.
Markham NR, Zuker M. Markham NR, et al. Among authors: zuker m. Methods Mol Biol. 2008;453:3-31. doi: 10.1007/978-1-60327-429-6_1. Methods Mol Biol. 2008. PMID: 18712296
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