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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1996 1
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1,891 results

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Page 1
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Robinson MD, McCarthy DJ, Smyth GK. Robinson MD, et al. Bioinformatics. 2010 Jan 1;26(1):139-40. doi: 10.1093/bioinformatics/btp616. Epub 2009 Nov 11. Bioinformatics. 2010. PMID: 19910308 Free PMC article.
One of the fundamental data analysis tasks, especially for gene expression studies, involves determining whether there is evidence that counts for a transcript or exon are significantly different across experimental conditions. edgeR is a Bioconductor software package for …
One of the fundamental data analysis tasks, especially for gene expression studies, involves determining whether there is evidence that coun …
Using R and Bioconductor in Clinical Genomics and Transcriptomics.
Sepulveda JL. Sepulveda JL. J Mol Diagn. 2020 Jan;22(1):3-20. doi: 10.1016/j.jmoldx.2019.08.006. Epub 2019 Oct 9. J Mol Diagn. 2020. PMID: 31605800 Free article. Review.
Software tools written in the R statistical language and, in particular, the set of tools available in the Bioconductor repository are widely used in research bioinformatics; and these frameworks offer several advantages for use in clinical bioinformatics, including the br …
Software tools written in the R statistical language and, in particular, the set of tools available in the Bioconductor repository ar …
clusterProfiler: an R package for comparing biological themes among gene clusters.
Yu G, Wang LG, Han Y, He QY. Yu G, et al. OMICS. 2012 May;16(5):284-7. doi: 10.1089/omi.2011.0118. Epub 2012 Mar 28. OMICS. 2012. PMID: 22455463 Free PMC article.
The clusterProfiler package is released under Artistic-2.0 License within Bioconductor project. The source code and vignette are freely available at http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html....
The clusterProfiler package is released under Artistic-2.0 License within Bioconductor project. The source code and vignette are free …
Bioconductor: an open source framework for bioinformatics and computational biology.
Reimers M, Carey VJ. Reimers M, et al. Methods Enzymol. 2006;411:119-34. doi: 10.1016/S0076-6879(06)11008-3. Methods Enzymol. 2006. PMID: 16939789 Review.
This chapter describes the Bioconductor project and details of its open source facilities for analysis of microarray and other high-throughput biological experiments. ...
This chapter describes the Bioconductor project and details of its open source facilities for analysis of microarray and other high-t …
monaLisa: an R/Bioconductor package for identifying regulatory motifs.
Machlab D, Burger L, Soneson C, Rijli FM, Schübeler D, Stadler MB. Machlab D, et al. Bioinformatics. 2022 Apr 28;38(9):2624-2625. doi: 10.1093/bioinformatics/btac102. Bioinformatics. 2022. PMID: 35199152 Free PMC article.
The package can be easily integrated with other Bioconductor packages and enables seamless motif analyses without any software dependencies outside of R. AVAILABILITY AND IMPLEMENTATION: monaLisa is implemented in R and available on Bioconductor at https://biocon
The package can be easily integrated with other Bioconductor packages and enables seamless motif analyses without any software depend …
Synaptome.db: a bioconductor package for synaptic proteomics data.
Sorokina O, Sorokin A, Armstrong JD. Sorokina O, et al. Bioinform Adv. 2022 Nov 12;2(1):vbac086. doi: 10.1093/bioadv/vbac086. eCollection 2022. Bioinform Adv. 2022. PMID: 36699346 Free PMC article.
Here, we describe programmatic access to the dataset via the R/Bioconductor package Synaptome.db, which enables convenient and in-depth data analysis from within the Bioconductor environment. ...AVAILABILITY AND IMPLEMENTATION: The package Synaptome.db is part of …
Here, we describe programmatic access to the dataset via the R/Bioconductor package Synaptome.db, which enables convenient and in-dep …
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.
Eagles NJ, Wilton R, Jaffe AE, Collado-Torres L. Eagles NJ, et al. BMC Bioinformatics. 2023 Sep 13;24(1):340. doi: 10.1186/s12859-023-05461-3. BMC Bioinformatics. 2023. PMID: 37704947 Free PMC article.
In addition, WGBS produces raw data that is large and often unwieldy; a lack of memory-efficient representation of data by existing pipelines renders WGBS impractical or impossible to many researchers. RESULTS: We present BiocMAP, a Bioconductor-friendly methylation analys …
In addition, WGBS produces raw data that is large and often unwieldy; a lack of memory-efficient representation of data by existing pipeline …
Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines.
Hu Q, Hutson A, Liu S, Morgan M, Liu Q. Hu Q, et al. Bioinformatics. 2021 Oct 11;37(19):3351-3352. doi: 10.1093/bioinformatics/btab208. Bioinformatics. 2021. PMID: 33772584 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: Project website: https://rcwl.org (Rcwl: https://bioconductor.org/packages/Rcwl; RcwlPipelines: https://bioconductor.org/packages/RcwlPipelines). ...
AVAILABILITY AND IMPLEMENTATION: Project website: https://rcwl.org (Rcwl: https://bioconductor.org/packages/Rcwl; RcwlPipelines: http …
microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization.
Cao Y, Dong Q, Wang D, Zhang P, Liu Y, Niu C. Cao Y, et al. Bioinformatics. 2022 Aug 10;38(16):4027-4029. doi: 10.1093/bioinformatics/btac438. Bioinformatics. 2022. PMID: 35771644
SUMMARY: Characterizing biomarkers based on microbiome profiles has great potential for translational medicine and precision medicine. Here, we present microbiomeMarker, an R/Bioconductor package implementing commonly used normalization and differential analysis (DA) metho …
SUMMARY: Characterizing biomarkers based on microbiome profiles has great potential for translational medicine and precision medicine. Here, …
1,891 results